Variant report

Variant	rs13244638
Chromosome Location	chr7:129258284-129258285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129258265..129261102-chr7:129275466..129276981,2	K562	blood:
2	chr7:129256866..129258455-chr7:129273026..129274955,2	K562	blood:
3	chr7:129256509..129259242-chr7:129259807..129261335,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10954245	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10954248	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10954251	0.88[ASN][1000 genomes]
rs11570363	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760589	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11761434	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11769146	0.87[ASN][1000 genomes]
rs11773023	0.87[ASN][1000 genomes]
rs11975979	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12154342	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12154677	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13225629	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13226276	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13230677	0.87[ASN][1000 genomes]
rs13231538	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13236221	0.88[ASN][1000 genomes]
rs17556221	0.88[ASN][1000 genomes]
rs17556430	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1962038	0.87[ASN][1000 genomes]
rs2293629	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2402967	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2402975	0.87[ASN][1000 genomes]
rs34498715	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36017781	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36033773	0.88[ASN][1000 genomes]
rs36083190	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736626	0.87[ASN][1000 genomes]
rs3800599	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6953987	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6959550	0.82[ASN][1000 genomes]
rs6975927	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6976516	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129259000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:129253000-129260200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:129253000-129262400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:129253000-129262400	Weak transcription	Ovary	ovary
6	chr7:129253000-129297200	Weak transcription	Lung	lung
7	chr7:129253200-129258400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr7:129253200-129258800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:129253200-129259000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr7:129253200-129259400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:129253200-129260200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr7:129253200-129260200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr7:129253200-129262200	Weak transcription	NH-A	brain
14	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
15	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
17	chr7:129253200-129283200	Weak transcription	HSMM	muscle
18	chr7:129253400-129258400	Enhancers	Primary B cells from cord blood	blood
19	chr7:129253400-129258600	Enhancers	Primary T cells from cord blood	blood
20	chr7:129253400-129259800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr7:129253400-129260400	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr7:129253400-129264200	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
26	chr7:129253800-129267400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
28	chr7:129254400-129259000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr7:129254600-129267000	Weak transcription	Fetal Brain Female	brain
30	chr7:129255200-129259600	Weak transcription	Fetal Intestine Small	intestine
31	chr7:129255200-129260200	Enhancers	HepG2	liver
32	chr7:129255200-129275200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
34	chr7:129255400-129267000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr7:129255600-129263000	Weak transcription	Fetal Heart	heart
36	chr7:129255600-129269000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
38	chr7:129255800-129258400	Enhancers	Fetal Thymus	thymus
39	chr7:129255800-129259400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:129256400-129258400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr7:129256400-129258400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr7:129256400-129267600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr7:129256400-129274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:129256600-129261600	Weak transcription	Left Ventricle	heart
45	chr7:129256600-129262400	Weak transcription	Pancreas	Pancrea
46	chr7:129256600-129265800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:129256600-129267200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:129256600-129269400	Weak transcription	Primary B cells from peripheral blood	blood
49	chr7:129256600-129283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:129256600-129284400	Weak transcription	HMEC	breast

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