Variant report

Variant	rs11773023
Chromosome Location	chr7:129343967-129343968
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129342137..129344526-chr7:129344552..129347478,2	K562	blood:
2	chr7:129336428..129340596-chr7:129341128..129344767,4	K562	blood:
3	chr7:129342582..129344113-chr7:129417247..129419847,2	K562	blood:
4	chr7:129342836..129345962-chr7:129418257..129420117,4	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10954245	0.87[ASN][1000 genomes]
rs10954248	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10954251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11557288	0.81[ASN][1000 genomes]
rs11570363	0.87[ASN][1000 genomes]
rs11760589	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11761434	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11769146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975979	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154342	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12154677	0.81[ASN][1000 genomes]
rs13225629	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13226276	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13230677	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231538	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13236221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13239011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13244638	0.87[ASN][1000 genomes]
rs17556221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17556430	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1984823	0.81[CEU][hapmap];0.90[GIH][hapmap]
rs2293629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2402967	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2402975	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34498715	0.87[ASN][1000 genomes]
rs36033773	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36083190	0.87[ASN][1000 genomes]
rs3736626	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800599	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4440554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4728175	0.94[ASW][hapmap];0.81[CEU][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs4731615	0.83[CEU][hapmap]
rs6953987	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6959550	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6975927	0.87[ASN][1000 genomes]
rs6976516	0.87[ASN][1000 genomes]
rs73159640	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9649538	0.88[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11773023	UBE2H	cis	cerebellum	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
2	chr7:129307200-129352000	Weak transcription	NHLF	lung
3	chr7:129311400-129352200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:129314800-129351200	Weak transcription	Pancreas	Pancrea
5	chr7:129315400-129357000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
7	chr7:129316400-129350200	Weak transcription	Brain Germinal Matrix	brain
8	chr7:129316400-129357200	Weak transcription	Fetal Brain Male	brain
9	chr7:129319000-129347000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
11	chr7:129319200-129351200	Weak transcription	Hela-S3	cervix
12	chr7:129320600-129350200	Weak transcription	Fetal Kidney	kidney
13	chr7:129325000-129350000	Weak transcription	Brain Substantia Nigra	brain
14	chr7:129328000-129369000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:129332000-129346800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:129332200-129348400	Weak transcription	A549	lung
17	chr7:129332200-129348600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:129332200-129349000	Weak transcription	Fetal Lung	lung
19	chr7:129332200-129350000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:129332200-129350000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr7:129332200-129350200	Weak transcription	Esophagus	oesophagus
22	chr7:129332200-129350200	Weak transcription	HUVEC	blood vessel
23	chr7:129332200-129351000	Weak transcription	Colon Smooth Muscle	Colon
24	chr7:129332400-129345200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:129332400-129348800	Weak transcription	Aorta	Aorta
26	chr7:129332400-129348800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr7:129332400-129350200	Weak transcription	Gastric	stomach
28	chr7:129332400-129350200	Weak transcription	Lung	lung
29	chr7:129332400-129351800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:129332600-129347400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr7:129332600-129349600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:129332600-129350200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr7:129332800-129345400	Weak transcription	Left Ventricle	heart
34	chr7:129332800-129345800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:129332800-129347400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr7:129332800-129347800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr7:129332800-129348800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr7:129332800-129348800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr7:129332800-129348800	Weak transcription	Spleen	Spleen
40	chr7:129332800-129350000	Weak transcription	Brain Angular Gyrus	brain
41	chr7:129332800-129350000	Weak transcription	Brain Anterior Caudate	brain
42	chr7:129332800-129350000	Weak transcription	Brain Hippocampus Middle	brain
43	chr7:129332800-129350200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:129332800-129352200	Weak transcription	Right Ventricle	heart
45	chr7:129333000-129347800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr7:129333000-129350000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr7:129333200-129345400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr7:129333200-129348600	Weak transcription	GM12878-XiMat	blood
49	chr7:129333400-129350000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr7:129333400-129350000	Weak transcription	Colonic Mucosa	Colon

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