Variant report

Variant	rs10954245
Chromosome Location	chr7:129229787-129229788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:129226672..129231038-chr7:129231303..129234307,4	K562	blood:
2	chr7:129228497..129230080-chr7:129250351..129251856,2	K562	blood:
3	chr7:129140737..129143345-chr7:129228671..129230719,2	MCF-7	breast:
4	chr7:129229009..129231952-chr7:129233633..129235471,2	K562	blood:
5	chr7:129228387..129230080-chr7:129250356..129252872,2	K562	blood:
6	chr7:129228621..129230780-chr7:129244504..129247498,2	K562	blood:
7	chr7:129228702..129231746-chr7:129233208..129236163,3	MCF-7	breast:
8	chr7:129228492..129230780-chr7:129245998..129248645,2	K562	blood:
9	chr7:129228150..129230324-chr7:129254634..129257789,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000273329	Chromatin interaction
ENSG00000240204	Chromatin interaction
ENSG00000106459	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10954248	0.88[ASN][1000 genomes]
rs10954251	0.88[ASN][1000 genomes]
rs11570363	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760589	0.88[ASN][1000 genomes]
rs11761434	0.87[ASN][1000 genomes]
rs11769146	0.87[ASN][1000 genomes]
rs11769676	0.91[EUR][1000 genomes]
rs11773023	0.87[ASN][1000 genomes]
rs11975979	0.88[ASN][1000 genomes]
rs12154342	0.83[ASN][1000 genomes]
rs12154677	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13225629	0.87[ASN][1000 genomes]
rs13226276	0.85[ASN][1000 genomes]
rs13230677	0.87[ASN][1000 genomes]
rs13231538	0.86[ASN][1000 genomes]
rs13236221	0.88[ASN][1000 genomes]
rs13244638	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17556221	0.88[ASN][1000 genomes]
rs17556430	0.87[ASN][1000 genomes]
rs1962038	0.87[ASN][1000 genomes]
rs2293629	0.83[ASN][1000 genomes]
rs2402967	0.88[ASN][1000 genomes]
rs2402975	0.87[ASN][1000 genomes]
rs34038233	0.91[EUR][1000 genomes]
rs34498715	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36017781	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36033773	0.88[ASN][1000 genomes]
rs36083190	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736626	0.87[ASN][1000 genomes]
rs3800599	0.87[ASN][1000 genomes]
rs6953987	0.88[ASN][1000 genomes]
rs6959550	0.82[ASN][1000 genomes]
rs6975927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6976516	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129228200-129231800	Weak transcription	Placenta	Placenta
2	chr7:129228800-129229800	Weak transcription	A549	lung

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