Variant report

Variant	rs11769146
Chromosome Location	chr7:129349101-129349102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129346556..129349952-chr7:129352168..129354717,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10954245	0.87[ASN][1000 genomes]
rs10954248	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10954251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11557288	0.81[ASN][1000 genomes]
rs11570363	0.87[ASN][1000 genomes]
rs11760589	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11761434	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11773023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975979	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154342	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12154677	0.81[ASN][1000 genomes]
rs13225629	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13226276	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13230677	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231538	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13236221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13239011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13244638	0.87[ASN][1000 genomes]
rs17556221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17556430	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1984823	0.81[CEU][hapmap];0.90[GIH][hapmap]
rs2293629	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2402967	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2402975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34498715	0.87[ASN][1000 genomes]
rs36033773	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36083190	0.87[ASN][1000 genomes]
rs3736626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800599	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4440554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4728175	0.81[CEU][hapmap];0.93[GIH][hapmap]
rs4731615	0.83[CEU][hapmap]
rs6953987	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6959550	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6975927	0.87[ASN][1000 genomes]
rs6976516	0.87[ASN][1000 genomes]
rs73159640	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9649538	0.88[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11769146	UBE2H	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
2	chr7:129307200-129352000	Weak transcription	NHLF	lung
3	chr7:129311400-129352200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:129314800-129351200	Weak transcription	Pancreas	Pancrea
5	chr7:129315400-129357000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
7	chr7:129316400-129350200	Weak transcription	Brain Germinal Matrix	brain
8	chr7:129316400-129357200	Weak transcription	Fetal Brain Male	brain
9	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
10	chr7:129319200-129351200	Weak transcription	Hela-S3	cervix
11	chr7:129320600-129350200	Weak transcription	Fetal Kidney	kidney
12	chr7:129325000-129350000	Weak transcription	Brain Substantia Nigra	brain
13	chr7:129328000-129369000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:129332200-129350000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:129332200-129350000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:129332200-129350200	Weak transcription	Esophagus	oesophagus
17	chr7:129332200-129350200	Weak transcription	HUVEC	blood vessel
18	chr7:129332200-129351000	Weak transcription	Colon Smooth Muscle	Colon
19	chr7:129332400-129350200	Weak transcription	Gastric	stomach
20	chr7:129332400-129350200	Weak transcription	Lung	lung
21	chr7:129332400-129351800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:129332600-129349600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:129332600-129350200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:129332800-129350000	Weak transcription	Brain Angular Gyrus	brain
25	chr7:129332800-129350000	Weak transcription	Brain Anterior Caudate	brain
26	chr7:129332800-129350000	Weak transcription	Brain Hippocampus Middle	brain
27	chr7:129332800-129350200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:129332800-129352200	Weak transcription	Right Ventricle	heart
29	chr7:129333000-129350000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr7:129333400-129350000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr7:129333400-129350000	Weak transcription	Colonic Mucosa	Colon
32	chr7:129334800-129349600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr7:129334800-129350000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:129337600-129359200	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr7:129338800-129350000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr7:129338800-129350200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr7:129338800-129351200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr7:129339000-129349400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:129339000-129349800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr7:129339000-129350800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr7:129339200-129356800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr7:129339200-129381800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr7:129339400-129350000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:129340800-129349800	Weak transcription	Fetal Intestine Large	intestine
45	chr7:129342800-129360200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr7:129342800-129367000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr7:129343000-129349800	Weak transcription	HepG2	liver
48	chr7:129343200-129379600	Weak transcription	Stomach Mucosa	stomach
49	chr7:129343400-129350000	Weak transcription	K562	blood
50	chr7:129343400-129361200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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