Variant report

Variant	rs4440554
Chromosome Location	chr7:129338181-129338182
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129332279..129335548-chr7:129335569..129339613,4	K562	blood:
2	chr7:129336428..129340596-chr7:129341128..129344767,4	K562	blood:
3	chr7:129333332..129335548-chr7:129335980..129339613,4	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10954248	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10954251	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11760589	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11761434	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11769146	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11773023	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11975979	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12154342	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13225629	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13226276	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13230677	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13231538	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13236221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13239011	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17556221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17556430	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1962038	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1984823	0.81[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2293629	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2402967	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2402975	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36033773	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3736626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3800599	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4728175	0.81[CEU][hapmap]
rs4731615	0.84[CEU][hapmap]
rs6467260	0.94[AFR][1000 genomes]
rs6953987	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6959550	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73159640	0.94[EUR][1000 genomes]
rs9649538	0.88[CHB][hapmap];0.88[JPT][hapmap]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
2	chr7:129305000-129338200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:129307200-129352000	Weak transcription	NHLF	lung
4	chr7:129311400-129352200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:129314800-129351200	Weak transcription	Pancreas	Pancrea
6	chr7:129315200-129341800	Weak transcription	NH-A	brain
7	chr7:129315400-129357000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
9	chr7:129316400-129350200	Weak transcription	Brain Germinal Matrix	brain
10	chr7:129316400-129357200	Weak transcription	Fetal Brain Male	brain
11	chr7:129317600-129338400	Weak transcription	K562	blood
12	chr7:129317800-129338400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:129317800-129338400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:129319000-129347000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
16	chr7:129319200-129351200	Weak transcription	Hela-S3	cervix
17	chr7:129320600-129350200	Weak transcription	Fetal Kidney	kidney
18	chr7:129325000-129350000	Weak transcription	Brain Substantia Nigra	brain
19	chr7:129328000-129369000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:129330600-129338400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr7:129330600-129338800	Weak transcription	HMEC	breast
22	chr7:129330800-129338400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:129332000-129341400	Weak transcription	HepG2	liver
24	chr7:129332000-129341800	Weak transcription	Osteobl	bone
25	chr7:129332000-129346800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr7:129332200-129338200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr7:129332200-129341600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr7:129332200-129348400	Weak transcription	A549	lung
29	chr7:129332200-129348600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr7:129332200-129349000	Weak transcription	Fetal Lung	lung
31	chr7:129332200-129350000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:129332200-129350000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr7:129332200-129350200	Weak transcription	Esophagus	oesophagus
34	chr7:129332200-129350200	Weak transcription	HUVEC	blood vessel
35	chr7:129332200-129351000	Weak transcription	Colon Smooth Muscle	Colon
36	chr7:129332400-129338600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr7:129332400-129343000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr7:129332400-129345200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr7:129332400-129348800	Weak transcription	Aorta	Aorta
40	chr7:129332400-129348800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr7:129332400-129350200	Weak transcription	Gastric	stomach
42	chr7:129332400-129350200	Weak transcription	Lung	lung
43	chr7:129332400-129351800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr7:129332600-129341400	Weak transcription	Ovary	ovary
45	chr7:129332600-129347400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr7:129332600-129349600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr7:129332600-129350200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr7:129332800-129338400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:129332800-129338600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr7:129332800-129338600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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