Variant report

Variant	rs36017781
Chromosome Location	chr7:129259199-129259200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129258265..129261102-chr7:129275466..129276981,2	K562	blood:
2	chr7:129256509..129259242-chr7:129259807..129261335,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10954245	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10954248	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11570363	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11760589	0.82[EUR][1000 genomes]
rs11761434	0.83[EUR][1000 genomes]
rs11975979	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12154677	0.83[EUR][1000 genomes]
rs13231538	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13244638	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2402967	0.83[EUR][1000 genomes]
rs34498715	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36083190	0.81[EUR][1000 genomes]
rs6953987	0.83[EUR][1000 genomes]
rs6975927	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6976516	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129260200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr7:129253000-129262400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:129253000-129262400	Weak transcription	Ovary	ovary
5	chr7:129253000-129297200	Weak transcription	Lung	lung
6	chr7:129253200-129259400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:129253200-129260200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr7:129253200-129260200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr7:129253200-129262200	Weak transcription	NH-A	brain
10	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
11	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
13	chr7:129253200-129283200	Weak transcription	HSMM	muscle
14	chr7:129253400-129259800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr7:129253400-129260400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr7:129253400-129264200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
20	chr7:129253800-129267400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
22	chr7:129254600-129267000	Weak transcription	Fetal Brain Female	brain
23	chr7:129255200-129259600	Weak transcription	Fetal Intestine Small	intestine
24	chr7:129255200-129260200	Enhancers	HepG2	liver
25	chr7:129255200-129275200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
27	chr7:129255400-129267000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr7:129255600-129263000	Weak transcription	Fetal Heart	heart
29	chr7:129255600-129269000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
31	chr7:129255800-129259400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr7:129256400-129267600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr7:129256400-129274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr7:129256600-129261600	Weak transcription	Left Ventricle	heart
35	chr7:129256600-129262400	Weak transcription	Pancreas	Pancrea
36	chr7:129256600-129265800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:129256600-129267200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr7:129256600-129269400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr7:129256600-129283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:129256600-129284400	Weak transcription	HMEC	breast
41	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
42	chr7:129256800-129264600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:129257200-129266000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr7:129257400-129259200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr7:129257400-129259400	Weak transcription	Small Intestine	intestine
46	chr7:129257400-129262600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr7:129257600-129259600	Weak transcription	A549	lung
48	chr7:129257600-129263800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr7:129257600-129269800	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr7:129257600-129274400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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