Variant report

Variant	rs62490955
Chromosome Location	chr7:129246479-129246480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:129149565..129151781-chr7:129245619..129248568,2	K562	blood:
2	chr7:129225250..129227766-chr7:129244638..129247298,2	MCF-7	breast:
3	chr7:129111736..129113508-chr7:129245423..129247398,2	MCF-7	breast:
4	chr7:129140962..129143945-chr7:129243314..129247330,3	MCF-7	breast:
5	chr7:129244786..129248579-chr7:129273930..129277174,4	MCF-7	breast:
6	chr7:129217261..129219089-chr7:129244632..129246610,2	MCF-7	breast:
7	chr7:129228492..129230780-chr7:129245998..129248645,2	K562	blood:
8	chr7:129244640..129247034-chr7:129428547..129431253,2	K562	blood:
9	chr7:129075026..129076715-chr7:129245649..129248205,2	K562	blood:
10	chr7:129234956..129236519-chr7:129244483..129247189,2	K562	blood:
11	chr7:129193932..129195991-chr7:129245048..129247026,2	K562	blood:
12	chr7:129237193..129242343-chr7:129243851..129248345,9	K562	blood:
13	chr7:129237193..129241667-chr7:129245468..129247836,5	K562	blood:
14	chr7:129225688..129227464-chr7:129245609..129247356,2	K562	blood:
15	chr7:129228621..129230780-chr7:129244504..129247498,2	K562	blood:
16	chr7:129166809..129169289-chr7:129245985..129248526,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UBE2H-2	chr7:129242678-129251482	NONHSAT123298
2	lnc-UBE2H-2	chr7:129244389-129251471	ENSG00000273329.1

No data

Variant related genes	Relation type
ENSG00000240204	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11771609	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12154955	0.94[ASN][1000 genomes]
rs12531460	0.84[ASN][1000 genomes]
rs12706898	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13233863	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6963433	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129232600-129246800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:129233400-129246600	Weak transcription	NHEK	skin
3	chr7:129233400-129247400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:129233600-129246600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:129235200-129249000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:129235200-129249800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:129235200-129250200	Weak transcription	Right Atrium	heart
8	chr7:129236000-129249000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:129237000-129248800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:129237000-129249800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:129238200-129248200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:129238800-129250400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:129240200-129250400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:129241400-129247200	Weak transcription	Fetal Thymus	thymus
15	chr7:129242800-129250400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:129243000-129246600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:129243000-129248200	Weak transcription	Fetal Kidney	kidney
18	chr7:129243200-129246600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr7:129243800-129250200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:129244200-129246600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:129244400-129246600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:129244400-129246600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr7:129244400-129246600	Weak transcription	Fetal Stomach	stomach
24	chr7:129244400-129246600	Weak transcription	K562	blood
25	chr7:129244600-129246600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr7:129244600-129248400	Weak transcription	Fetal Lung	lung
27	chr7:129244600-129249200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:129244800-129246600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:129244800-129247200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:129244800-129250000	Weak transcription	Fetal Brain Female	brain
31	chr7:129244800-129250400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:129245000-129246600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr7:129245000-129248400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:129245000-129248400	Weak transcription	Ovary	ovary
35	chr7:129245000-129248400	Weak transcription	Thymus	Thymus
36	chr7:129245000-129249600	Weak transcription	NH-A	brain
37	chr7:129245000-129249800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr7:129245000-129250400	Weak transcription	Stomach Mucosa	stomach
39	chr7:129245200-129246800	Weak transcription	Dnd41	blood
40	chr7:129245200-129247000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr7:129245200-129247200	Weak transcription	Liver	Liver
42	chr7:129245200-129249000	Weak transcription	Lung	lung
43	chr7:129245200-129249800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr7:129245200-129250400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr7:129245200-129250600	Weak transcription	Esophagus	oesophagus
46	chr7:129245400-129246600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:129245400-129249000	Weak transcription	Pancreas	Pancrea
48	chr7:129245400-129250600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr7:129245600-129246800	Enhancers	Primary B cells from cord blood	blood
50	chr7:129245600-129247800	Enhancers	Primary monocytes fromperipheralblood	blood

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