Variant report

Variant	rs4524641
Chromosome Location	chr6:58776785-58776786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:49)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:49 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:32301912..32302764-chr6:58776740..58777661,2	MCF-7	breast:
2	chr4:26787771..26789874-chr6:58775360..58778093,2	MCF-7	breast:
3	chr3:90450072..90451589-chr6:58776092..58777719,4	MCF-7	breast:
4	chr20:52327864..52329489-chr6:58775870..58778258,2	MCF-7	breast:
5	chr6:58776657..58777247-chrX:136737324..136737914,2	MCF-7	breast:
6	chr1:201243876..201245779-chr6:58775647..58777227,2	MCF-7	breast:
7	chr6:58776711..58777237-chr8:105771574..105772190,2	MCF-7	breast:
8	chr6:58775076..58778073-chr8:103250732..103252303,2	K562	blood:
9	chr5:157496470..157497451-chr6:58776593..58777234,3	MCF-7	breast:
10	chr1:216349276..216351630-chr6:58776732..58778763,2	MCF-7	breast:
11	chr6:58776637..58777632-chr8:18871298..18871912,2	HCT-116	colon:
12	chr17:56707619..56709303-chr6:58776177..58777680,2	MCF-7	breast:
13	chr20:45984506..45987023-chr6:58776231..58780015,3	MCF-7	breast:
14	chr17:73716896..73718915-chr6:58776651..58778729,2	MCF-7	breast:
15	chr21:9826269..9827015-chr6:58776389..58777037,2	MCF-7	breast:
16	chr6:30581365..30583375-chr6:58776545..58779152,2	MCF-7	breast:
17	chr12:117585721..117587663-chr6:58775712..58777632,2	MCF-7	breast:
18	chr2:219259923..219262856-chr6:58776591..58778942,2	MCF-7	breast:
19	chr4:44422694..44424195-chr6:58776128..58778515,2	MCF-7	breast:
20	chr6:58772143..58775007-chr6:58776713..58778919,5	K562	blood:
21	chr12:38031932..38033432-chr6:58775709..58777615,2	MCF-7	breast:
22	chr6:58776666..58779159-chr8:125462787..125464378,2	MCF-7	breast:
23	chr20:36661511..36663112-chr6:58773928..58776889,2	K562	blood:
24	chr6:58776722..58778356-chr8:48323824..48325324,2	MCF-7	breast:
25	chr17:57920709..57924714-chr6:58775095..58779071,5	MCF-7	breast:
26	chr17:57697051..57699517-chr6:58775454..58778452,2	MCF-7	breast:
27	chr6:58775915..58778901-chr8:144691705..144693500,2	MCF-7	breast:
28	chr14:19022553..19024053-chr6:58774785..58777168,2	MCF-7	breast:
29	chr17:56735441..56738187-chr6:58776197..58778735,2	MCF-7	breast:
30	chr6:58773141..58775009-chr6:58776566..58778429,2	MCF-7	breast:
31	chr20:17516282..17517977-chr6:58775914..58778767,2	MCF-7	breast:
32	chr5:157496471..157496971-chr6:58776705..58777406,2	MCF-7	breast:
33	chr21:35272607..35275458-chr6:58776178..58778758,2	MCF-7	breast:
34	chr11:66445363..66446008-chr6:58776703..58777356,2	MCF-7	breast:
35	chr20:19348440..19350405-chr6:58776310..58778887,2	MCF-7	breast:
36	chr20:46135534..46137185-chr6:58775644..58777423,2	MCF-7	breast:
37	chr16:85495639..85498852-chr6:58775657..58778770,3	MCF-7	breast:
38	chr3:63980131..63982580-chr6:58776275..58779243,2	MCF-7	breast:
39	chr6:58776676..58777225-chr8:72532546..72533088,2	MCF-7	breast:
40	chr6:31849956..31851616-chr6:58776203..58778751,2	MCF-7	breast:
41	chr10:74031778..74033740-chr6:58774757..58776794,2	MCF-7	breast:
42	chr15:50229689..50230313-chr6:58776456..58777229,2	MCF-7	breast:
43	chr17:57928094..57930742-chr6:58776120..58778676,4	MCF-7	breast:
44	chr12:38031911..38033432-chr6:58776341..58779018,2	MCF-7	breast:
45	chr3:90450069..90451571-chr6:58776178..58778913,3	MCF-7	breast:
46	chr6:58776120..58778273-chr8:145699925..145701982,2	MCF-7	breast:
47	chr22:21356184..21359058-chr6:58776120..58778924,2	MCF-7	breast:
48	chr17:56707689..56709464-chr6:58776179..58779153,2	MCF-7	breast:
49	chr12:80435495..80437852-chr6:58775102..58777367,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000202077	Chromatin interaction
ENSG00000132470	Chromatin interaction
ENSG00000160973	Chromatin interaction
ENSG00000163635	Chromatin interaction
ENSG00000230513	Chromatin interaction
ENSG00000246263	Chromatin interaction
ENSG00000104524	Chromatin interaction
ENSG00000237080	Chromatin interaction
ENSG00000141367	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000048392	Chromatin interaction
ENSG00000168209	Chromatin interaction
ENSG00000184436	Chromatin interaction
ENSG00000173914	Chromatin interaction
ENSG00000183665	Chromatin interaction
ENSG00000101407	Chromatin interaction
ENSG00000101413	Chromatin interaction
ENSG00000101040	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603237	chr6:58231219-58780055	Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
2	nsv427758	chr6:58502261-58780166	ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
3	nsv603243	chr6:58754939-58779628	Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
4	esv3401131	chr6:58771993-58780166	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
5	esv3348712	chr6:58772493-58780166	Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
6	esv3351952	chr6:58772493-58780166	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
7	esv3370259	chr6:58772493-58780166	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
8	esv3402710	chr6:58772493-58780166	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
9	nsv821263	chr6:58773370-58780132	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
10	esv16605	chr6:58773521-58780132	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
11	esv3522846	chr6:58773602-58777174	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	30 gene(s)	inside rSNPs	diseases
12	esv3522847	chr6:58773602-58777174	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	30 gene(s)	inside rSNPs	diseases
13	esv4510	chr6:58773913-58779741	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
14	esv2440024	chr6:58773927-58778724	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
15	esv6861	chr6:58774124-58777928	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
16	nsv603244	chr6:58774249-58776961	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
17	esv8948	chr6:58774500-58779296	Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
18	esv5564	chr6:58774524-58778232	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	53 gene(s)	inside rSNPs	diseases
19	esv5877	chr6:58774642-58778682	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
20	esv8678	chr6:58775025-58778770	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
21	esv3345082	chr6:58775117-58777887	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
22	nsv603245	chr6:58775200-58778429	Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
23	nsv603246	chr6:58775200-58780055	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
24	nsv603247	chr6:58775704-58778496	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
25	esv3502891	chr6:58775730-58777887	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
26	esv3502892	chr6:58775730-58777887	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
27	esv6387	chr6:58775945-58777262	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	36 gene(s)	inside rSNPs	diseases
28	esv3399876	chr6:58776522-58777887	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription	Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
29	esv6537	chr6:58776526-58779269	Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
30	nsv603248	chr6:58776605-58780055	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
31	esv3423543	chr6:58776670-58779110	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
32	esv3507404	chr6:58776681-58779113	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
33	esv3507405	chr6:58776681-58779113	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
34	esv6078	chr6:58776693-58776873	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
35	esv9323	chr6:58776702-58776921	Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
36	esv14420	chr6:58776769-58780132	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription Weak transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:58773400-58779400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr6:58773400-58779400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:58773400-58779400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:58773400-58779400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
5	chr6:58773400-58779400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr6:58773400-58779400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr6:58773400-58779400	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr6:58773400-58779400	ZNF genes & repeats	Fetal Stomach	stomach
9	chr6:58773400-58779400	ZNF genes & repeats	Left Ventricle	heart
10	chr6:58773600-58779200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
11	chr6:58773600-58779400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
12	chr6:58773600-58779400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
13	chr6:58773600-58779400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr6:58773600-58779400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr6:58773600-58779400	ZNF genes & repeats	Primary B cells from cord blood	blood
16	chr6:58773600-58779400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
17	chr6:58773600-58779400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:58773600-58779400	ZNF genes & repeats	Fetal Intestine Large	intestine
19	chr6:58776200-58779400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:58776400-58778200	ZNF genes & repeats	Brain Germinal Matrix	brain
21	chr6:58776400-58779200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:58776400-58779400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:58776400-58779400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
24	chr6:58776400-58779400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:58776400-58779400	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
26	chr6:58776400-58779400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
27	chr6:58776600-58776800	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:58776600-58776800	Flanking Bivalent TSS/Enh	Right Atrium	heart
29	chr6:58776600-58776800	Flanking Bivalent TSS/Enh	HSMM	muscle
30	chr6:58776600-58777000	ZNF genes & repeats	HepG2	liver
31	chr6:58776600-58777200	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:58776600-58777200	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
33	chr6:58776600-58777200	Flanking Bivalent TSS/Enh	Osteobl	bone
34	chr6:58776600-58777400	Flanking Bivalent TSS/Enh	Pancreas	Pancrea
35	chr6:58776600-58777400	Flanking Bivalent TSS/Enh	HSMMtube	muscle
36	chr6:58776600-58777400	Flanking Bivalent TSS/Enh	NHLF	lung
37	chr6:58776600-58777600	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:58776600-58777600	Flanking Bivalent TSS/Enh	Right Ventricle	heart
39	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
40	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
41	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
42	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
43	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
44	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
45	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Pancreatic Islets	Pancreatic Islet
46	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Stomach Mucosa	stomach
47	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
48	chr6:58776600-58777800	Flanking Bivalent TSS/Enh	Dnd41	blood
49	chr6:58776600-58778000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:58776600-58778000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine

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