Variant report

Variant	rs4525890
Chromosome Location	chr3:21983193-21983194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs12330142	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13066816	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1479984	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1497925	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1626065	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1679239	0.89[EUR][1000 genomes]
rs1684488	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1694015	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1694016	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17010418	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2291821	0.87[EUR][1000 genomes]
rs2593314	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2593325	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs259482	0.89[EUR][1000 genomes]
rs259508	0.87[EUR][1000 genomes]
rs259509	0.87[EUR][1000 genomes]
rs259510	0.87[EUR][1000 genomes]
rs259511	0.89[EUR][1000 genomes]
rs259513	0.87[EUR][1000 genomes]
rs259514	0.89[EUR][1000 genomes]
rs259515	0.89[EUR][1000 genomes]
rs259517	0.89[EUR][1000 genomes]
rs259518	0.89[EUR][1000 genomes]
rs259520	0.88[EUR][1000 genomes]
rs259521	0.88[EUR][1000 genomes]
rs259537	0.85[EUR][1000 genomes]
rs259538	0.85[EUR][1000 genomes]
rs259564	0.89[EUR][1000 genomes]
rs259566	0.87[EUR][1000 genomes]
rs2620536	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34025961	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34708854	0.89[EUR][1000 genomes]
rs35478822	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35541916	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35726889	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs36151232	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4270525	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4271936	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4280654	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4340722	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4420894	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4440143	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4441677	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4610243	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4610244	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4627765	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4638988	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs472117	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs473395	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs474387	0.89[EUR][1000 genomes]
rs476982	0.89[EUR][1000 genomes]
rs478011	0.89[EUR][1000 genomes]
rs478832	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs479923	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs485483	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs485569	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4858370	0.87[EUR][1000 genomes]
rs500881	0.89[EUR][1000 genomes]
rs501056	0.86[EUR][1000 genomes]
rs502259	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs503119	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs504039	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs504757	0.89[EUR][1000 genomes]
rs504917	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs505109	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs509513	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs521724	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs526390	0.85[EUR][1000 genomes]
rs526429	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs527517	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs536133	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs536196	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs536986	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs537870	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs549089	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs552049	0.82[EUR][1000 genomes]
rs559082	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs559861	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs559894	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs562629	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs563648	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs568153	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs581184	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs586425	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs598684	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs599540	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs610316	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs610320	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs611146	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs611545	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs613768	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs615095	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs618682	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs625615	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs627323	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs627773	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs627776	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs628155	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs628226	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs629944	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs630769	0.89[EUR][1000 genomes]
rs631246	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs632070	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs638809	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs638844	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs641517	0.89[EUR][1000 genomes]
rs641518	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs641910	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs642045	0.89[EUR][1000 genomes]
rs645017	0.87[AFR][1000 genomes]
rs662789	0.90[EUR][1000 genomes]
rs671377	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs675415	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs680685	0.89[EUR][1000 genomes]
rs7639658	0.89[EUR][1000 genomes]
rs9814232	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9854895	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2751992	chr3:21786893-22212357	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv948555	chr3:21786893-22212357	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1003085	chr3:21887971-22415107	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv834633	chr3:21918264-22088338	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv876614	chr3:21919039-21994022	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv876616	chr3:21946847-22310622	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv876617	chr3:21955784-22310622	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1003934	chr3:21960795-21999895	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv999478	chr3:21971861-22012241	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv1012736	chr3:21976021-22000946	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
12	nsv460473	chr3:21976413-21985417	Enhancers Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
13	nsv589931	chr3:21976413-21985417	Weak transcription Enhancers Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
14	nsv1012217	chr3:21976969-22000946	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
15	nsv1000732	chr3:21976969-22012241	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21971800-21983800	Weak transcription	Fetal Heart	heart
2	chr3:21982000-21987200	Weak transcription	Fetal Lung	lung
3	chr3:21982600-21983800	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links