Variant report

Variant	rs4526571
Chromosome Location	chr1:176182722-176182723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:176178997..176181795-chr1:176182441..176184646,3	MCF-7	breast:
2	chr1:176182002..176183788-chr1:176187433..176190030,2	K562	blood:
3	chr1:176175244..176178958-chr1:176179061..176187498,12	MCF-7	breast:
4	chr1:176182122..176184952-chr1:176354424..176356281,2	K562	blood:

Variant related genes	Relation type
ENSG00000236021	Chromatin interaction
ENSG00000143207	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10494498	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs10753117	0.97[GIH][hapmap];0.85[TSI][hapmap]
rs10798446	0.81[EUR][1000 genomes]
rs10798447	0.85[EUR][1000 genomes]
rs10913128	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs10913142	0.80[EUR][1000 genomes]
rs10913144	0.80[EUR][1000 genomes]
rs10913145	0.80[EUR][1000 genomes]
rs10913147	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs10913148	0.83[EUR][1000 genomes]
rs10913160	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12033847	0.82[CEU][hapmap];0.97[GIH][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap]
rs12033997	0.81[EUR][1000 genomes]
rs12034255	0.80[EUR][1000 genomes]
rs12039741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12040241	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12042918	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12047295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12049077	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs12404596	0.82[CEU][hapmap];0.97[GIH][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap]
rs12409108	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12755507	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17354120	0.97[GIH][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs2175177	1.00[GIH][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs2861672	0.80[EUR][1000 genomes]
rs34215167	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34511428	0.83[EUR][1000 genomes]
rs3748618	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6673760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6678812	0.97[GIH][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap]
rs6684140	0.80[EUR][1000 genomes]
rs7514517	0.81[EUR][1000 genomes]
rs7517503	0.97[GIH][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes]
rs7553759	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv872563	chr1:175949646-176184625	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176177600-176198600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:176178200-176189400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:176178200-176193800	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links