Variant report

Variant	rs10798447
Chromosome Location	chr1:176180020-176180021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:176178997..176181795-chr1:176182441..176184646,3	MCF-7	breast:
2	chr1:176175244..176178958-chr1:176179061..176187498,12	MCF-7	breast:
3	chr1:176178548..176180685-chr1:176189640..176192354,2	K562	blood:

Variant related genes	Relation type
ENSG00000236021	Chromatin interaction
ENSG00000143207	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10218714	0.84[EUR][1000 genomes]
rs10458350	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10753117	0.83[EUR][1000 genomes]
rs10753118	0.84[EUR][1000 genomes]
rs10798444	0.83[EUR][1000 genomes]
rs10798446	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10798448	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10913131	0.84[EUR][1000 genomes]
rs10913132	0.83[EUR][1000 genomes]
rs10913133	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10913134	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10913135	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10913137	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10913142	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10913143	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10913144	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10913145	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10913147	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10913148	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11582888	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12033847	0.83[EUR][1000 genomes]
rs12033997	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12034255	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12039741	0.81[EUR][1000 genomes]
rs12042918	0.81[EUR][1000 genomes]
rs12049077	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12404596	0.84[EUR][1000 genomes]
rs12409108	0.81[EUR][1000 genomes]
rs12735810	0.83[EUR][1000 genomes]
rs12755507	0.83[EUR][1000 genomes]
rs1553770	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17354120	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1858181	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1912243	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2175177	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2455750	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2861672	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34511428	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs352312	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4442332	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4526571	0.85[EUR][1000 genomes]
rs4652156	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6673760	0.80[EUR][1000 genomes]
rs6678628	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6678812	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6684140	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7514517	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7517503	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7522843	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7534058	0.83[EUR][1000 genomes]
rs7538600	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7553759	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv872563	chr1:175949646-176184625	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176177600-176180200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:176177600-176180200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:176177600-176180200	Weak transcription	Stomach Mucosa	stomach
4	chr1:176177600-176181200	Weak transcription	Psoas Muscle	Psoas
5	chr1:176177600-176198600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:176177800-176180200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:176177800-176180200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr1:176178000-176180200	Weak transcription	Primary B cells from cord blood	blood
9	chr1:176178000-176180200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:176178200-176180200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr1:176178200-176189400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:176178200-176193800	Weak transcription	Pancreas	Pancrea
13	chr1:176179000-176181800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr1:176179800-176181400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr1:176179800-176181800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr1:176180000-176181200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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