Variant report

Variant	rs10798448
Chromosome Location	chr1:176200923-176200924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10458350	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798447	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10913148	0.81[EUR][1000 genomes]
rs11582888	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12049077	0.81[EUR][1000 genomes]
rs12117920	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12137300	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354286	0.84[ASN][1000 genomes]
rs1503124	0.89[EUR][1000 genomes]
rs1553770	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1858181	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1912243	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2175177	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2221333	0.88[EUR][1000 genomes]
rs2455724	0.87[EUR][1000 genomes]
rs2455727	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2455729	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2455731	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2455748	0.88[EUR][1000 genomes]
rs2455750	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2455756	0.90[ASN][1000 genomes]
rs2504472	0.97[ASN][1000 genomes]
rs2504492	0.88[EUR][1000 genomes]
rs2504494	0.88[EUR][1000 genomes]
rs2504499	0.88[EUR][1000 genomes]
rs2504502	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2504503	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2504512	0.90[ASN][1000 genomes]
rs2504514	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2861675	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123622	0.89[EUR][1000 genomes]
rs34511428	0.82[EUR][1000 genomes]
rs352311	0.99[ASN][1000 genomes]
rs352312	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs352314	1.00[ASN][1000 genomes]
rs4130088	0.80[EUR][1000 genomes]
rs4442332	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642850	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4652156	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538600	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176186000-176221400	Weak transcription	Brain Angular Gyrus	brain
2	chr1:176197000-176201800	Weak transcription	Brain Substantia Nigra	brain
3	chr1:176199400-176201000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:176199600-176202200	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:176200600-176201000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:176200600-176201000	ZNF genes & repeats	Gastric	stomach

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