Variant report

Variant	rs2861675
Chromosome Location	chr1:176212599-176212600
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10458350	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798448	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11582888	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117920	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12137300	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354286	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1503116	0.84[EUR][1000 genomes]
rs1503124	0.80[EUR][1000 genomes]
rs1553770	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1858181	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1912243	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2221333	0.80[EUR][1000 genomes]
rs2455725	0.94[EUR][1000 genomes]
rs2455726	0.92[EUR][1000 genomes]
rs2455727	0.90[ASN][1000 genomes]
rs2455729	0.90[ASN][1000 genomes]
rs2455731	0.90[ASN][1000 genomes]
rs2455748	0.80[EUR][1000 genomes]
rs2455750	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2455751	0.93[EUR][1000 genomes]
rs2455756	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2504472	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2504479	0.94[EUR][1000 genomes]
rs2504480	0.94[EUR][1000 genomes]
rs2504492	0.80[EUR][1000 genomes]
rs2504493	0.94[EUR][1000 genomes]
rs2504494	0.80[EUR][1000 genomes]
rs2504499	0.80[EUR][1000 genomes]
rs2504502	0.90[ASN][1000 genomes]
rs2504503	0.90[ASN][1000 genomes]
rs2504512	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2504514	0.85[ASN][1000 genomes]
rs3123622	0.80[EUR][1000 genomes]
rs352311	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs352312	0.99[ASN][1000 genomes]
rs352314	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4442332	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642850	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4650941	0.95[EUR][1000 genomes]
rs4650943	0.81[EUR][1000 genomes]
rs4652156	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4652173	0.81[EUR][1000 genomes]
rs7538600	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176186000-176221400	Weak transcription	Brain Angular Gyrus	brain
2	chr1:176210000-176212600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:176210400-176213200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:176210800-176212600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:176211000-176213800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:176211400-176212600	Weak transcription	Osteobl	bone
7	chr1:176211800-176213200	Weak transcription	Hela-S3	cervix
8	chr1:176212000-176214000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:176212200-176212600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:176212400-176212800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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