Variant report

Variant	rs2504479
Chromosome Location	chr1:176386499-176386500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12117920	0.94[EUR][1000 genomes]
rs12137300	0.94[EUR][1000 genomes]
rs1354286	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1503116	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1503124	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2221333	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455724	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455726	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2455727	0.84[ASN][1000 genomes]
rs2455729	0.84[ASN][1000 genomes]
rs2455731	0.84[ASN][1000 genomes]
rs2455748	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455751	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2455756	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2504472	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2504480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504492	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504493	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2504494	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504499	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504502	0.84[ASN][1000 genomes]
rs2504503	0.84[ASN][1000 genomes]
rs2504512	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2861675	0.94[EUR][1000 genomes]
rs3123622	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs352311	0.96[EUR][1000 genomes]
rs352314	0.95[EUR][1000 genomes]
rs4130088	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4147204	0.81[ASN][1000 genomes]
rs4233166	0.97[ASN][1000 genomes]
rs4642850	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4650941	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650943	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4652173	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4652175	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831970	chr1:176386162-176569207	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176385400-176389600	Enhancers	Dnd41	blood
2	chr1:176386200-176386800	Enhancers	HUES6 Cell Line	embryonic stem cell

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