Variant report

Variant	rs2504493
Chromosome Location	chr1:176341328-176341329
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:176175519..176177756-chr1:176341116..176344107,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236021	Chromatin interaction
ENSG00000143207	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10458350	0.87[JPT][hapmap]
rs10913152	0.81[ASN][1000 genomes]
rs10913166	1.00[ASN][1000 genomes]
rs12117377	0.81[ASN][1000 genomes]
rs12117920	0.94[EUR][1000 genomes]
rs12121951	0.83[ASN][1000 genomes]
rs12137300	0.95[EUR][1000 genomes]
rs12731148	0.94[ASN][1000 genomes]
rs12758275	0.80[ASN][1000 genomes]
rs1354286	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1393763	0.94[ASN][1000 genomes]
rs1503116	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1503124	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16849826	0.83[ASN][1000 genomes]
rs184764	0.86[JPT][hapmap]
rs1858537	0.81[ASN][1000 genomes]
rs191606	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2039230	0.86[JPT][hapmap]
rs2102479	0.81[ASN][1000 genomes]
rs2175178	0.81[ASN][1000 genomes]
rs2221333	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2455724	0.80[EUR][1000 genomes]
rs2455725	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2455726	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2455730	0.93[ASN][1000 genomes]
rs2455732	0.93[ASN][1000 genomes]
rs2455748	0.81[EUR][1000 genomes]
rs2455749	0.84[ASN][1000 genomes]
rs2455751	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2455756	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2455762	0.94[ASN][1000 genomes]
rs2455764	1.00[ASN][1000 genomes]
rs2457418	0.86[JPT][hapmap]
rs2487144	0.86[JPT][hapmap]
rs2504472	0.96[EUR][1000 genomes]
rs2504473	0.86[JPT][hapmap]
rs2504479	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2504480	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2504492	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2504494	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2504499	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2504501	0.94[ASN][1000 genomes]
rs2504512	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2861675	0.94[EUR][1000 genomes]
rs3123622	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34612848	0.91[ASN][1000 genomes]
rs352311	0.96[EUR][1000 genomes]
rs352314	0.95[EUR][1000 genomes]
rs352330	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs352334	0.87[JPT][hapmap]
rs35907544	0.82[ASN][1000 genomes]
rs3924562	0.94[ASN][1000 genomes]
rs3962371	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4642850	0.83[EUR][1000 genomes]
rs4650941	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4650943	0.81[EUR][1000 genomes]
rs4652173	0.81[EUR][1000 genomes]
rs534088	0.81[ASN][1000 genomes]
rs6687280	0.81[ASN][1000 genomes]
rs6700932	0.80[ASN][1000 genomes]
rs679728	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs704829	0.86[JPT][hapmap]
rs704834	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs71645275	0.81[ASN][1000 genomes]
rs7535769	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs791743	0.86[JPT][hapmap]
rs813180	0.83[JPT][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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