Variant report

Variant	rs2504512
Chromosome Location	chr1:176283866-176283867
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10458350	0.90[ASN][1000 genomes]
rs10798448	0.90[ASN][1000 genomes]
rs10913160	0.83[ASN][1000 genomes]
rs11582888	0.90[ASN][1000 genomes]
rs12117920	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12137300	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1354286	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1503116	0.85[EUR][1000 genomes]
rs1503124	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1553770	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1858181	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1912243	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2221333	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2455724	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2455725	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2455726	0.93[EUR][1000 genomes]
rs2455727	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455729	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455731	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455748	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2455750	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2455751	0.94[EUR][1000 genomes]
rs2455756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504472	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2504479	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2504480	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2504492	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2504493	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2504494	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2504499	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2504502	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504503	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504514	0.89[ASN][1000 genomes]
rs2861675	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3123622	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs352311	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs352312	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs352314	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4130088	0.84[ASN][1000 genomes]
rs4233166	0.81[ASN][1000 genomes]
rs4442332	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4642850	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4650941	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4650943	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4652156	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4652173	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4652175	0.81[ASN][1000 genomes]
rs7538600	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176283000-176284000	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr1:176283200-176284000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr1:176283200-176284000	Active TSS	K562	blood
4	chr1:176283800-176284400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links