Variant report

Variant	rs4642850
Chromosome Location	chr1:176342216-176342217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:176175519..176177756-chr1:176341116..176344107,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143207	Chromatin interaction
ENSG00000236021	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10458350	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10798448	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11582888	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12117920	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12137300	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1354286	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1503124	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1553770	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1858181	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1912243	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2221333	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2455724	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2455725	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2455726	0.80[EUR][1000 genomes]
rs2455727	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2455729	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2455731	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2455748	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2455750	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2455751	0.81[EUR][1000 genomes]
rs2455756	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2504472	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2504479	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2504480	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2504492	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2504493	0.83[EUR][1000 genomes]
rs2504494	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2504499	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2504502	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2504503	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2504512	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2504514	0.82[EUR][1000 genomes]
rs2861675	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3123622	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs352311	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs352312	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs352314	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4130088	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4147204	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4233166	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4442332	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4650941	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4650943	0.91[ASN][1000 genomes]
rs4652156	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4652173	0.91[ASN][1000 genomes]
rs4652175	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7538600	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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