Variant report

Variant	rs1553770
Chromosome Location	chr1:176219438-176219439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10458350	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10753117	0.81[JPT][hapmap]
rs10798446	0.83[JPT][hapmap]
rs10798447	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10798448	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913135	0.82[JPT][hapmap]
rs10913137	0.83[JPT][hapmap]
rs10913143	0.83[JPT][hapmap]
rs10913144	0.83[JPT][hapmap]
rs10913147	0.83[JPT][hapmap]
rs11582888	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12033847	0.81[JPT][hapmap]
rs12049077	0.83[JPT][hapmap]
rs12117920	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12137300	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12404596	0.81[JPT][hapmap]
rs1354286	0.84[ASN][1000 genomes]
rs1503124	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17354120	0.86[JPT][hapmap]
rs184764	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1858181	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1912243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs191606	0.86[JPT][hapmap]
rs2175177	0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2221333	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2455724	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2455727	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2455729	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2455731	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2455748	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2455750	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2455756	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2504472	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2504473	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs2504492	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2504493	0.87[JPT][hapmap]
rs2504494	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2504499	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2504502	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2504503	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2504512	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2504514	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2861675	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123622	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs352311	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs352312	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs352314	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs352330	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs352334	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3962371	0.87[JPT][hapmap]
rs4130088	0.81[EUR][1000 genomes]
rs4442332	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642850	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4652156	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6678628	0.83[JPT][hapmap]
rs6678812	0.86[JPT][hapmap]
rs679728	0.86[JPT][hapmap]
rs704834	0.86[JPT][hapmap]
rs7517503	0.86[JPT][hapmap]
rs7535769	0.86[JPT][hapmap]
rs7538600	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176186000-176221400	Weak transcription	Brain Angular Gyrus	brain

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