Variant report

Variant	rs4130088
Chromosome Location	chr1:176406673-176406674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:176405363..176407403-chr1:176408034..176409833,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10458350	0.80[EUR][1000 genomes]
rs10798448	0.80[EUR][1000 genomes]
rs11582888	0.80[EUR][1000 genomes]
rs1354286	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1503116	0.83[EUR][1000 genomes]
rs1503124	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1553770	0.81[EUR][1000 genomes]
rs184764	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1858181	0.81[EUR][1000 genomes]
rs1912243	0.81[EUR][1000 genomes]
rs2221333	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455724	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455725	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2455727	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2455729	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2455731	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2455748	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455750	0.83[EUR][1000 genomes]
rs2455756	0.84[ASN][1000 genomes]
rs2504473	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2504479	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2504480	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2504492	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504494	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504499	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504502	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2504503	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2504512	0.84[ASN][1000 genomes]
rs3123622	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs352312	0.82[EUR][1000 genomes]
rs352330	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs352334	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs4147204	0.81[ASN][1000 genomes]
rs4233166	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4442332	0.81[EUR][1000 genomes]
rs4642850	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4650941	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4650943	0.95[ASN][1000 genomes]
rs4652156	0.81[EUR][1000 genomes]
rs4652173	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4652175	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7538600	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831970	chr1:176386162-176569207	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176406200-176415600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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