Variant report

Variant	rs1503116
Chromosome Location	chr1:176403244-176403245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10913166	0.94[ASN][1000 genomes]
rs12117920	0.84[EUR][1000 genomes]
rs12121951	0.88[ASN][1000 genomes]
rs12137300	0.85[EUR][1000 genomes]
rs12731148	1.00[ASN][1000 genomes]
rs1354286	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1393763	1.00[ASN][1000 genomes]
rs16849826	0.88[ASN][1000 genomes]
rs184764	0.82[JPT][hapmap]
rs191606	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2455725	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2455726	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455730	0.88[ASN][1000 genomes]
rs2455732	0.88[ASN][1000 genomes]
rs2455751	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2455756	0.85[EUR][1000 genomes]
rs2455762	0.88[ASN][1000 genomes]
rs2455764	0.94[ASN][1000 genomes]
rs2504472	0.85[EUR][1000 genomes]
rs2504473	0.82[JPT][hapmap]
rs2504479	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2504480	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2504493	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2504501	0.88[ASN][1000 genomes]
rs2504512	0.85[EUR][1000 genomes]
rs2861675	0.84[EUR][1000 genomes]
rs34612848	0.97[ASN][1000 genomes]
rs352311	0.85[EUR][1000 genomes]
rs352314	0.85[EUR][1000 genomes]
rs352330	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs352334	0.83[JPT][hapmap]
rs3924562	1.00[ASN][1000 genomes]
rs3962371	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4130088	0.83[EUR][1000 genomes]
rs4650941	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4650943	0.91[EUR][1000 genomes]
rs4652173	0.92[EUR][1000 genomes]
rs7535769	0.91[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831970	chr1:176386162-176569207	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176403200-176404600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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