Variant report

Variant	rs34612848
Chromosome Location	chr1:176416381-176416382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10913152	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10913166	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12117377	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12121951	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12731148	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12758275	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1393763	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1503116	0.97[ASN][1000 genomes]
rs16849826	0.85[ASN][1000 genomes]
rs1858537	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs191606	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2102479	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2175178	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2455726	0.97[ASN][1000 genomes]
rs2455730	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2455732	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2455749	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2455751	0.97[ASN][1000 genomes]
rs2455762	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2455764	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2504493	0.91[ASN][1000 genomes]
rs2504501	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35907544	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3924562	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3962371	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4298694	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs482228	0.81[EUR][1000 genomes]
rs534088	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6687280	0.85[EUR][1000 genomes]
rs6700932	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs679728	0.85[EUR][1000 genomes]
rs704834	0.84[EUR][1000 genomes]
rs71645275	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7535769	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831970	chr1:176386162-176569207	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1004658	chr1:176412174-176460420	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176415800-176417200	Weak transcription	Placenta	Placenta

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