Variant report

Variant	rs6700932
Chromosome Location	chr1:176193951-176193952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:176175264..176176910-chr1:176192478..176194132,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236021	Chromatin interaction
ENSG00000143207	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10913152	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10913166	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12117377	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12121951	0.82[EUR][1000 genomes]
rs12731148	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12758275	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1393763	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1858537	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs191606	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2039230	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2102479	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2175178	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2455730	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2455732	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2455749	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2455762	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2455764	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2457418	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2487144	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2504493	0.80[ASN][1000 genomes]
rs2504501	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34612848	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35907544	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3924562	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3962371	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4298694	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs482228	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs501142	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs513354	0.88[AMR][1000 genomes]
rs520661	0.88[AMR][1000 genomes]
rs534088	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs542742	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs596859	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs617078	0.88[AMR][1000 genomes]
rs659279	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs668154	0.88[AMR][1000 genomes]
rs6687280	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs670143	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs679728	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs704829	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs704834	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71645275	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7535769	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs791743	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs791746	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs791747	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs791750	0.81[EUR][1000 genomes]
rs791751	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs791752	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs791753	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs813180	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9425447	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176177600-176198600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:176186000-176221400	Weak transcription	Brain Angular Gyrus	brain
3	chr1:176193200-176194000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:176193600-176195000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:176193600-176195200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:176193600-176195200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:176193600-176195200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:176193800-176195200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:176193800-176195200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:176193800-176195400	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links