The 2.0 version of rSNPBase

Variant report

Variant rs501142
Chromosome Location chr1:176156192-176156193
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:176110600-176164000 Weak transcription NHLF lung
2 chr1:176126400-176168800 Weak transcription Small Intestine intestine
3 chr1:176127000-176174000 Weak transcription Colon Smooth Muscle Colon
4 chr1:176128000-176157800 Weak transcription Spleen Spleen
5 chr1:176128000-176175200 Weak transcription Esophagus oesophagus
6 chr1:176137400-176173000 Weak transcription Right Ventricle heart
7 chr1:176140000-176157800 Weak transcription H1 Cell Line embryonic stem cell
8 chr1:176140000-176168200 Weak transcription Psoas Muscle Psoas
9 chr1:176142800-176157800 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr1:176142800-176162200 Weak transcription HepG2 liver
11 chr1:176143000-176165800 Weak transcription Lung lung
12 chr1:176144000-176172800 Weak transcription HMEC breast
13 chr1:176144400-176158200 Weak transcription Muscle Satellite Cultured Cells --
14 chr1:176144400-176170800 Weak transcription K562 blood
15 chr1:176144400-176173400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr1:176144600-176168600 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr1:176144800-176164600 Weak transcription NHDF-Ad bronchial
18 chr1:176144800-176172800 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr1:176145000-176173200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
20 chr1:176146000-176171400 Weak transcription Left Ventricle heart
21 chr1:176146000-176173000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:176147600-176157400 Weak transcription Fetal Intestine Large intestine
23 chr1:176147600-176161200 Weak transcription HUVEC blood vessel
24 chr1:176148000-176156600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr1:176149600-176157200 Weak transcription Brain Hippocampus Middle brain
26 chr1:176150400-176158000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr1:176150600-176173000 Weak transcription Hela-S3 cervix
28 chr1:176151600-176160000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:176151800-176173000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
30 chr1:176152000-176159200 Weak transcription Liver Liver
31 chr1:176152000-176168800 Weak transcription Primary B cells from cord blood blood
32 chr1:176152000-176168800 Weak transcription Primary hematopoietic stem cells short term culture blood
33 chr1:176152000-176173000 Weak transcription Thymus Thymus
34 chr1:176152800-176156400 Weak transcription Primary T cells fromperipheralblood blood
35 chr1:176153000-176161000 Weak transcription Adipose Nuclei Adipose
36 chr1:176153000-176161200 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr1:176153000-176162400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr1:176153200-176156800 Weak transcription Primary T helper naive cells from peripheral blood blood
39 chr1:176153200-176165800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
40 chr1:176153200-176173000 Weak transcription Primary hematopoietic stem cells blood
41 chr1:176153600-176157400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr1:176153600-176157800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr1:176153600-176161200 Weak transcription Primary T cells from cord blood blood
44 chr1:176153600-176169600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr1:176153600-176173000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:176153600-176173000 Weak transcription HSMM muscle
47 chr1:176153800-176157600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr1:176153800-176157600 Weak transcription GM12878-XiMat blood
49 chr1:176153800-176157800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
50 chr1:176153800-176166200 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015