Variant report

Variant	rs3924562
Chromosome Location	chr1:176406618-176406619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:176405363..176407403-chr1:176408034..176409833,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10913152	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10913166	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12117377	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12121951	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12731148	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12758275	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1393763	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503116	1.00[ASN][1000 genomes]
rs16849826	0.88[ASN][1000 genomes]
rs184764	0.82[JPT][hapmap]
rs1858537	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs191606	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2102479	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2175178	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2455726	1.00[ASN][1000 genomes]
rs2455730	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2455732	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2455749	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2455751	1.00[ASN][1000 genomes]
rs2455762	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2455764	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2504473	0.82[JPT][hapmap]
rs2504493	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2504501	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34612848	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs352330	0.82[JPT][hapmap]
rs352334	0.83[JPT][hapmap]
rs35907544	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3962371	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4298694	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs482228	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs534088	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6687280	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6700932	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs679728	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs704834	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71645275	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7535769	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831970	chr1:176386162-176569207	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176406200-176415600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links