Variant report

Variant	rs16849826
Chromosome Location	chr1:176405993-176405994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10913166	0.83[ASN][1000 genomes]
rs12731148	0.88[ASN][1000 genomes]
rs1393763	0.88[ASN][1000 genomes]
rs1503116	0.88[ASN][1000 genomes]
rs191606	0.82[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap]
rs2455726	0.88[ASN][1000 genomes]
rs2455751	0.88[ASN][1000 genomes]
rs2455764	0.83[ASN][1000 genomes]
rs2504493	0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs34612848	0.85[ASN][1000 genomes]
rs3924562	0.88[ASN][1000 genomes]
rs7535769	0.82[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831970	chr1:176386162-176569207	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16849826	EME2	trans	cerebellum	SCAN
rs16849826	VAMP4	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176405600-176406200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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