Variant report

Variant	rs11582888
Chromosome Location	chr1:176195396-176195397
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10458350	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798446	0.80[AMR][1000 genomes]
rs10798447	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10798448	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913148	0.81[EUR][1000 genomes]
rs12049077	0.81[EUR][1000 genomes]
rs12117920	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12137300	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354286	0.84[ASN][1000 genomes]
rs1503124	0.89[EUR][1000 genomes]
rs1553770	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1858181	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1912243	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2175177	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2221333	0.88[EUR][1000 genomes]
rs2455724	0.87[EUR][1000 genomes]
rs2455727	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2455729	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2455731	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2455748	0.88[EUR][1000 genomes]
rs2455750	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2455756	0.90[ASN][1000 genomes]
rs2504472	0.97[ASN][1000 genomes]
rs2504492	0.88[EUR][1000 genomes]
rs2504494	0.88[EUR][1000 genomes]
rs2504499	0.88[EUR][1000 genomes]
rs2504502	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2504503	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2504512	0.90[ASN][1000 genomes]
rs2504514	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2861675	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3123622	0.89[EUR][1000 genomes]
rs34511428	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs352311	0.99[ASN][1000 genomes]
rs352312	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs352314	1.00[ASN][1000 genomes]
rs4130088	0.80[EUR][1000 genomes]
rs4442332	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642850	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4652156	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538600	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176177600-176198600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:176186000-176221400	Weak transcription	Brain Angular Gyrus	brain
3	chr1:176193800-176195400	Enhancers	Duodenum Mucosa	Duodenum
4	chr1:176194000-176197600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:176194600-176196400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:176194800-176195400	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr1:176194800-176195600	Enhancers	Fetal Muscle Leg	muscle
8	chr1:176195000-176195400	Flanking Active TSS	HepG2	liver
9	chr1:176195000-176195800	Enhancers	Liver	Liver
10	chr1:176195000-176196400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:176195200-176196200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr1:176195200-176196200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:176195200-176196400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:176195200-176196400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr1:176195200-176196400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr1:176195200-176196400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:176195200-176196600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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