Variant report

Variant	rs4526889
Chromosome Location	chr13:96280596-96280597
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16951267	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs3087337	1.00[CEU][hapmap]
rs6492812	0.86[EUR][1000 genomes]
rs7139515	1.00[CEU][hapmap]
rs7319610	1.00[CEU][hapmap]
rs7991191	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9584313	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96235600-96284200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr13:96247800-96293600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:96251400-96294400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:96256400-96295200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:96256800-96294200	Weak transcription	Placenta	Placenta
6	chr13:96260200-96293400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:96261200-96288400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr13:96262000-96280800	Weak transcription	Fetal Heart	heart
9	chr13:96263600-96290000	Weak transcription	Adipose Nuclei	Adipose
10	chr13:96265800-96293400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr13:96266400-96286000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr13:96267600-96293000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:96268400-96286400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:96268400-96291600	Strong transcription	Osteobl	bone
15	chr13:96268800-96281400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr13:96270200-96293400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr13:96271600-96284800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr13:96272400-96292000	Weak transcription	Colonic Mucosa	Colon
19	chr13:96272600-96284000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:96273000-96287400	Strong transcription	Fetal Lung	lung
21	chr13:96273400-96281400	Weak transcription	Brain Hippocampus Middle	brain
22	chr13:96273400-96284000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr13:96273600-96293400	Weak transcription	Brain Substantia Nigra	brain
24	chr13:96273600-96293600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr13:96273600-96293600	Weak transcription	Left Ventricle	heart
26	chr13:96273800-96293600	Weak transcription	Gastric	stomach
27	chr13:96273800-96293600	Weak transcription	Pancreas	Pancrea
28	chr13:96274000-96281400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr13:96274200-96280800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr13:96275800-96280600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr13:96275800-96281000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr13:96275800-96281200	Weak transcription	HSMMtube	muscle
33	chr13:96276200-96280800	Weak transcription	HepG2	liver
34	chr13:96276800-96281400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr13:96276800-96286800	Weak transcription	Fetal Intestine Small	intestine
36	chr13:96276800-96293400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr13:96277200-96280600	Weak transcription	HUVEC	blood vessel
38	chr13:96278000-96280600	Weak transcription	NH-A	brain
39	chr13:96278400-96285800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr13:96278800-96290000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr13:96279000-96285200	Strong transcription	Fetal Kidney	kidney
42	chr13:96279000-96285400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr13:96279200-96280600	ZNF genes & repeats	Brain Germinal Matrix	brain
44	chr13:96279200-96281000	ZNF genes & repeats	Fetal Brain Female	brain
45	chr13:96279200-96285400	Strong transcription	Fetal Brain Male	brain
46	chr13:96279200-96286000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr13:96279200-96293800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr13:96279400-96285400	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr13:96279400-96285800	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr13:96279400-96292000	Strong transcription	HUES6 Cell Line	embryonic stem cell

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