Variant report

Variant	rs452953
Chromosome Location	chr9:93846826-93846827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs296631	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs296632	0.85[ASN][1000 genomes]
rs296633	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs296634	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs296635	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs296636	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs296638	0.88[ASN][1000 genomes]
rs2986638	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs435940	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052912	chr9:93846078-93866362	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93841000-93847800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:93841200-93847800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:93841600-93849600	Weak transcription	Fetal Intestine Small	intestine
4	chr9:93843000-93849000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:93846600-93847200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr9:93846600-93847400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:93846600-93847800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:93846600-93850200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr9:93846800-93847000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:93846800-93847200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:93846800-93847200	Weak transcription	HepG2	liver
12	chr9:93846800-93847600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:93846800-93847600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr9:93846800-93847800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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