Variant report

Variant	rs4532176
Chromosome Location	chr3:159973102-159973103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159968836..159971700-chr3:159972093..159975074,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10513550	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2275153	0.81[ASN][1000 genomes]
rs2305406	0.81[ASN][1000 genomes]
rs33999879	0.81[ASN][1000 genomes]
rs3773371	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs41272959	0.81[ASN][1000 genomes]
rs55815116	0.81[ASN][1000 genomes]
rs56150006	0.81[ASN][1000 genomes]
rs56894043	0.81[ASN][1000 genomes]
rs57030267	0.81[ASN][1000 genomes]
rs57285344	0.81[ASN][1000 genomes]
rs58654032	0.81[ASN][1000 genomes]
rs58915028	0.81[ASN][1000 genomes]
rs59799252	0.81[ASN][1000 genomes]
rs60153357	0.81[ASN][1000 genomes]
rs60222090	0.81[ASN][1000 genomes]
rs60914777	0.81[ASN][1000 genomes]
rs61066536	0.81[ASN][1000 genomes]
rs62272169	0.81[ASN][1000 genomes]
rs62272176	0.81[ASN][1000 genomes]
rs62272179	0.81[ASN][1000 genomes]
rs62272185	0.81[ASN][1000 genomes]
rs62272187	0.81[ASN][1000 genomes]
rs62272188	0.81[ASN][1000 genomes]
rs62272190	0.81[ASN][1000 genomes]
rs62272191	0.81[ASN][1000 genomes]
rs62272193	0.81[ASN][1000 genomes]
rs62272196	0.81[ASN][1000 genomes]
rs62272197	0.81[ASN][1000 genomes]
rs62272198	0.81[ASN][1000 genomes]
rs62272231	0.81[ASN][1000 genomes]
rs62272236	0.81[ASN][1000 genomes]
rs62272237	0.81[ASN][1000 genomes]
rs62272245	0.81[ASN][1000 genomes]
rs62272247	0.81[ASN][1000 genomes]
rs66769612	0.81[ASN][1000 genomes]
rs66850724	0.81[ASN][1000 genomes]
rs6791269	0.85[ASN][1000 genomes]
rs68069205	0.81[ASN][1000 genomes]
rs73154587	0.81[ASN][1000 genomes]
rs7618017	0.81[ASN][1000 genomes]
rs9637414	1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv877699	chr3:159820488-159976271	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
5	esv1800136	chr3:159950498-160278160	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	esv1801767	chr3:159950498-160279411	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159968600-159975600	Weak transcription	Primary B cells from cord blood	blood
2	chr3:159969200-159974000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:159971000-159976200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:159971400-160035800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:159971800-159977000	Weak transcription	Primary T cells from cord blood	blood
6	chr3:159971800-159986200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:159971800-160009600	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:159972400-159984800	Weak transcription	Ovary	ovary
9	chr3:159972600-160009400	Weak transcription	Fetal Stomach	stomach
10	chr3:159972800-159974600	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:159972800-159977000	Weak transcription	Left Ventricle	heart
12	chr3:159972800-159999000	Weak transcription	Aorta	Aorta

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