Variant report

Variant	rs4533035
Chromosome Location	chr11:23767708-23767709
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:23766902..23769192-chr6:80655556..80658439,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118402	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11027474	1.00[ASN][1000 genomes]
rs11027480	0.96[EUR][1000 genomes]
rs11819925	1.00[ASN][1000 genomes]
rs11820608	1.00[ASN][1000 genomes]
rs11820669	1.00[ASN][1000 genomes]
rs11822638	1.00[ASN][1000 genomes]
rs11825290	1.00[ASN][1000 genomes]
rs11826810	1.00[ASN][1000 genomes]
rs11827258	1.00[ASN][1000 genomes]
rs11827769	1.00[ASN][1000 genomes]
rs11828544	1.00[ASN][1000 genomes]
rs12269859	1.00[ASN][1000 genomes]
rs12275084	0.95[EUR][1000 genomes]
rs12294764	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4265597	1.00[ASN][1000 genomes]
rs4317983	1.00[ASN][1000 genomes]
rs4337039	1.00[ASN][1000 genomes]
rs4469891	1.00[ASN][1000 genomes]
rs4472941	0.97[EUR][1000 genomes]
rs55864826	0.93[EUR][1000 genomes]
rs57681918	1.00[ASN][1000 genomes]
rs61699497	1.00[ASN][1000 genomes]
rs61876062	1.00[ASN][1000 genomes]
rs61876063	1.00[ASN][1000 genomes]
rs61876065	1.00[ASN][1000 genomes]
rs61876067	1.00[ASN][1000 genomes]
rs61876068	1.00[ASN][1000 genomes]
rs61876071	1.00[ASN][1000 genomes]
rs7127540	0.95[EUR][1000 genomes]
rs7127545	0.95[EUR][1000 genomes]
rs73439870	1.00[ASN][1000 genomes]
rs73439876	1.00[ASN][1000 genomes]
rs9651581	0.97[EUR][1000 genomes]
rs9651582	1.00[ASN][1000 genomes]
rs9666772	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv897063	chr11:23723766-23940407	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3508599	chr11:23744425-23768884	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3508600	chr11:23744425-23768884	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv897064	chr11:23767292-23859991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv897065	chr11:23767292-23882931	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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