Variant report

Variant	rs4533416
Chromosome Location	chr19:20822999-20823000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10408881	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35228442	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4641874	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73008338	0.80[AMR][1000 genomes]
rs8110124	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911325	chr19:20151257-21071548	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
2	esv2758489	chr19:20574295-20845947	Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758749	chr19:20574295-20845947	ZNF genes & repeats Genic enhancers Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530804	chr19:20574295-21001349	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
5	nsv978786	chr19:20818886-20884983	Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv911407	chr19:20818886-20885811	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv911408	chr19:20818886-20885811	Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1065039	chr19:20818886-20977326	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv2751781	chr19:20818886-20985425	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv578921	chr19:20818886-20985425	ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv458510	chr19:20818886-20987550	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv578910	chr19:20818886-20987550	Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv578917	chr19:20818886-20989873	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv578918	chr19:20818886-21008212	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	esv3447275	chr19:20818886-21030779	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	esv2752729	chr19:20818886-21169554	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
17	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
18	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
19	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4533416	ZNF626	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:20812400-20827200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:20814600-20842200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:20815000-20825400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr19:20815000-20827400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr19:20815000-20827400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr19:20815000-20843400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr19:20815200-20843200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:20815800-20827200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
9	chr19:20816200-20827000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr19:20816200-20827200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr19:20816200-20827200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
12	chr19:20816200-20827200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
13	chr19:20816200-20827400	ZNF genes & repeats	Fetal Lung	lung
14	chr19:20816200-20827600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr19:20816200-20828200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr19:20816200-20831000	ZNF genes & repeats	Liver	Liver
17	chr19:20816200-20843000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr19:20816400-20825600	ZNF genes & repeats	Fetal Kidney	kidney
19	chr19:20816400-20842600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
20	chr19:20817800-20826800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
21	chr19:20819000-20823600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr19:20819800-20823600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr19:20820000-20825000	Weak transcription	HSMM	muscle
24	chr19:20820200-20823600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr19:20820200-20824800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr19:20820200-20825000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr19:20820400-20827600	ZNF genes & repeats	Primary B cells from cord blood	blood
28	chr19:20820800-20827200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr19:20821000-20823600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr19:20821000-20825000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr19:20821000-20842400	Weak transcription	K562	blood
32	chr19:20821400-20827000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr19:20821400-20827400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
34	chr19:20821400-20827400	ZNF genes & repeats	Primary T cells from cord blood	blood
35	chr19:20821600-20827200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
36	chr19:20821600-20827400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr19:20821800-20827400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
38	chr19:20822200-20823600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr19:20822200-20825000	Weak transcription	Brain Anterior Caudate	brain
40	chr19:20822200-20827200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr19:20822400-20823600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr19:20822400-20823800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr19:20822400-20825000	Weak transcription	Brain Hippocampus Middle	brain
44	chr19:20822400-20826600	Weak transcription	Brain Angular Gyrus	brain
45	chr19:20822400-20827000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
46	chr19:20822400-20827200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr19:20822400-20828600	Strong transcription	Osteobl	bone
48	chr19:20822600-20823400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr19:20822600-20823400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr19:20822600-20823400	Weak transcription	Fetal Intestine Large	intestine

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