Variant report

Variant	rs4534168
Chromosome Location	chr8:89609651-89609652
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:89604118..89605802-chr8:89608046..89610893,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10504857	0.81[EUR][1000 genomes]
rs13249157	0.81[EUR][1000 genomes]
rs13263416	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265056	0.90[ASN][1000 genomes]
rs16884476	0.81[EUR][1000 genomes]
rs34246550	0.81[EUR][1000 genomes]
rs34272390	0.86[ASN][1000 genomes]
rs34805957	0.84[ASN][1000 genomes]
rs34919099	0.85[EUR][1000 genomes]
rs34976712	0.81[EUR][1000 genomes]
rs35209645	0.90[ASN][1000 genomes]
rs35380858	0.81[EUR][1000 genomes]
rs35529952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35642681	0.93[EUR][1000 genomes]
rs35672725	0.81[EUR][1000 genomes]
rs35715471	0.81[EUR][1000 genomes]
rs36053186	0.81[EUR][1000 genomes]
rs4269585	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4484741	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57311533	0.81[EUR][1000 genomes]
rs7003288	0.89[CHB][hapmap]
rs7003595	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs71526949	0.81[EUR][1000 genomes]
rs71526952	0.86[ASN][1000 genomes]
rs71526955	0.86[ASN][1000 genomes]
rs7829812	0.85[EUR][1000 genomes]
rs7833665	0.85[EUR][1000 genomes]
rs7838490	0.81[EUR][1000 genomes]
rs9969514	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv891172	chr8:89439469-89640705	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv891173	chr8:89509223-89996790	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024633	chr8:89517079-89959574	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv539666	chr8:89517079-89959574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1027744	chr8:89526571-89609651	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv429927	chr8:89529845-89609684	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1023877	chr8:89552013-89900874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv891174	chr8:89578032-89658050	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89603400-89611000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:89607600-89611000	Weak transcription	H9 Cell Line	embryonic stem cell

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