Variant report

Variant	rs35529952
Chromosome Location	chr8:89606888-89606889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10504857	0.81[EUR][1000 genomes]
rs13249157	0.81[EUR][1000 genomes]
rs13263416	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13265056	1.00[ASN][1000 genomes]
rs13268211	0.83[ASN][1000 genomes]
rs16884476	0.81[EUR][1000 genomes]
rs34246550	0.81[EUR][1000 genomes]
rs34272390	0.96[ASN][1000 genomes]
rs34805957	0.94[ASN][1000 genomes]
rs34919099	0.85[EUR][1000 genomes]
rs34976712	0.81[EUR][1000 genomes]
rs35209645	1.00[ASN][1000 genomes]
rs35380858	0.81[EUR][1000 genomes]
rs35642681	0.93[EUR][1000 genomes]
rs35672725	0.81[EUR][1000 genomes]
rs35715471	0.81[EUR][1000 genomes]
rs36053186	0.81[EUR][1000 genomes]
rs4269585	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4484741	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4534168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57311533	0.81[EUR][1000 genomes]
rs66469903	0.83[ASN][1000 genomes]
rs71526949	0.81[EUR][1000 genomes]
rs71526952	0.96[ASN][1000 genomes]
rs71526955	0.96[ASN][1000 genomes]
rs7829812	0.85[EUR][1000 genomes]
rs7833665	0.85[EUR][1000 genomes]
rs7838490	0.81[EUR][1000 genomes]
rs9969514	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv891172	chr8:89439469-89640705	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv891173	chr8:89509223-89996790	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1024633	chr8:89517079-89959574	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv539666	chr8:89517079-89959574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1027744	chr8:89526571-89609651	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv429927	chr8:89529845-89609684	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv520279	chr8:89534091-89607437	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1023877	chr8:89552013-89900874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv891174	chr8:89578032-89658050	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89603400-89611000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:89604400-89607400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:89604800-89607200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:89605000-89607200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:89605600-89607200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:89605800-89607400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:89606400-89607200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:89606600-89607000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:89606600-89607400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:89606600-89607600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr8:89606800-89607200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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