Variant report

Variant	rs66469903
Chromosome Location	chr8:89603122-89603123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13256903	0.81[EUR][1000 genomes]
rs13265056	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13267565	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13268211	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34272390	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34805957	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35209645	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35529952	0.83[ASN][1000 genomes]
rs35871366	0.87[AMR][1000 genomes]
rs36025043	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4269585	0.98[ASN][1000 genomes]
rs4484741	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66766214	0.87[AMR][1000 genomes]
rs67264423	0.87[AMR][1000 genomes]
rs71526952	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71526955	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7817740	0.87[AMR][1000 genomes]
rs9969514	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv891172	chr8:89439469-89640705	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv891173	chr8:89509223-89996790	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1024633	chr8:89517079-89959574	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv539666	chr8:89517079-89959574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1027744	chr8:89526571-89609651	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv429927	chr8:89529845-89609684	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv520279	chr8:89534091-89607437	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1023877	chr8:89552013-89900874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv891174	chr8:89578032-89658050	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89601600-89603200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr8:89601800-89603400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr8:89601800-89603400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:89602000-89603400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:89602000-89604200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:89602000-89604400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr8:89602600-89603600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:89602800-89603600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:89603000-89603400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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