Variant report

Variant	rs4535573
Chromosome Location	chr6:147126270-147126271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1052444	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1052449	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1052451	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12529705	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1324679	0.94[JPT][hapmap]
rs2328760	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs3861404	0.95[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6927572	0.89[JPT][hapmap]
rs7772319	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9373507	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9373509	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9377026	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs9377027	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9377028	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9386168	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9386169	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390422	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390423	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390425	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9399586	0.94[JPT][hapmap]
rs9403818	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403822	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147125400-147133600	Weak transcription	K562	blood

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