Variant report
Variant | rs9386168 |
---|---|
Chromosome Location | chr6:147132965-147132966 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
ENSG00000228283 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1052444 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1052449 | 0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1052451 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12529705 | 0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2025505 | 0.80[ASN][1000 genomes] |
rs2025506 | 0.80[ASN][1000 genomes] |
rs2328760 | 0.84[EUR][1000 genomes] |
rs3861404 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4535573 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7772319 | 0.86[EUR][1000 genomes] |
rs9373507 | 0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9373508 | 0.85[ASN][1000 genomes] |
rs9373509 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs9377027 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9377028 | 0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9386169 | 0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9386170 | 0.81[ASN][1000 genomes] |
rs9386171 | 0.81[ASN][1000 genomes] |
rs9390422 | 0.88[ASN][1000 genomes] |
rs9390423 | 0.87[ASN][1000 genomes] |
rs9390425 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9403818 | 0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9403820 | 0.80[ASN][1000 genomes] |
rs9485129 | 0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv830838 | chr6:147090745-147274669 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
2 | nsv966634 | chr6:147128760-147141217 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | esv2518343 | chr6:147129690-147138004 | Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | esv3526991 | chr6:147130896-147137152 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | esv3526992 | chr6:147130896-147137152 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | esv3475079 | chr6:147130951-147138090 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | esv3475080 | chr6:147130951-147138090 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
8 | esv3329784 | chr6:147131018-147137998 | Flanking Active TSS Weak transcription Enhancers Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
9 | esv3326141 | chr6:147131185-147138244 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:147125400-147133600 | Weak transcription | K562 | blood |
2 | chr6:147129600-147136800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
3 | chr6:147130800-147137400 | Weak transcription | Placenta | Placenta |