Variant report

Variant	rs4537521
Chromosome Location	chr1:216187482-216187483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10495011	1.00[JPT][hapmap]
rs12025483	1.00[MKK][hapmap]
rs12144255	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1347627	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1436772	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1657235	0.91[EUR][1000 genomes]
rs17025589	1.00[JPT][hapmap]
rs17025676	1.00[JPT][hapmap]
rs17025679	1.00[JPT][hapmap]
rs17025680	1.00[JPT][hapmap]
rs17025681	1.00[JPT][hapmap]
rs17025684	1.00[JPT][hapmap]
rs17025685	1.00[JPT][hapmap]
rs17025690	1.00[JPT][hapmap]
rs17025699	1.00[JPT][hapmap]
rs17025701	1.00[JPT][hapmap]
rs17025702	1.00[JPT][hapmap]
rs17025758	1.00[JPT][hapmap]
rs17025764	1.00[JPT][hapmap]
rs17025797	1.00[JPT][hapmap]
rs17025799	1.00[JPT][hapmap]
rs17025802	1.00[JPT][hapmap]
rs17042187	1.00[JPT][hapmap]
rs1821761	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2365634	0.88[AMR][1000 genomes]
rs2764949	0.91[EUR][1000 genomes]
rs2813725	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2813726	0.91[EUR][1000 genomes]
rs2813727	1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs4481823	1.00[JPT][hapmap]
rs4481824	1.00[JPT][hapmap]
rs566191	0.94[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes]
rs626192	1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs646378	1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs6540922	1.00[JPT][hapmap]
rs6676313	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687538	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6692241	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs678706	0.91[EUR][1000 genomes]
rs680512	0.86[AFR][1000 genomes]
rs7528148	1.00[JPT][hapmap]
rs7543477	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs772716	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv428599	chr1:216086224-216267211	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv873172	chr1:216144827-216281673	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv873173	chr1:216151789-216204488	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv873174	chr1:216151789-216211989	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216187200-216187600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:216187200-216187800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr1:216187200-216188200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:216187200-216188200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:216187200-216188400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:216187200-216188600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:216187200-216188800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:216187200-216188800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:216187400-216188200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

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