Variant report

Variant	rs17025589
Chromosome Location	chr1:216079294-216079295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10495011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1347627	1.00[JPT][hapmap]
rs1436772	1.00[JPT][hapmap]
rs17025555	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17025676	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17025679	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17025680	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17025681	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17025684	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17025685	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17025690	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17025699	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17025701	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17025702	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17025758	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17025764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs17025797	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17025799	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17025802	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17042187	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1821761	1.00[JPT][hapmap]
rs2813727	1.00[JPT][hapmap]
rs4481823	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4481824	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4537521	1.00[JPT][hapmap]
rs566191	1.00[JPT][hapmap]
rs626192	1.00[JPT][hapmap]
rs646378	1.00[JPT][hapmap]
rs6540922	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6658138	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6676313	1.00[JPT][hapmap]
rs6687538	1.00[JPT][hapmap]
rs6692241	1.00[JPT][hapmap]
rs6700853	1.00[YRI][hapmap]
rs7528148	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv949671	chr1:215942740-216120815	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832548	chr1:215987089-216175724	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv520724	chr1:216077764-216080155	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216076200-216079600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:216077800-216081000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:216078400-216079400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:216078600-216079400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:216078800-216079800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:216079000-216079600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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