Variant report
| Variant | rs6658138 |
|---|---|
| Chromosome Location | chr1:216134335-216134336 |
| allele | A/C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10495011 | 1.00[CEU][hapmap] |
| rs17025589 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs17025676 | 1.00[YRI][hapmap] |
| rs17025679 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17025680 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17025681 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs17025683 | 0.84[AFR][1000 genomes] |
| rs17025684 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs17025685 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs17025690 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17025699 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17025701 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17025702 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17025758 | 1.00[CEU][hapmap] |
| rs17025764 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17025797 | 1.00[CEU][hapmap] |
| rs17025799 | 1.00[CEU][hapmap] |
| rs17025802 | 1.00[CEU][hapmap] |
| rs17042187 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs41431546 | 1.00[CHB][hapmap] |
| rs4481823 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs4481824 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs6540922 | 1.00[CEU][hapmap] |
| rs6687555 | 1.00[AFR][1000 genomes] |
| rs7519164 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
| rs7547834 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs7547908 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006504 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv535288 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv832548 | chr1:215987089-216175724 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv428599 | chr1:216086224-216267211 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | esv1844934 | chr1:216132878-216179889 | Weak transcription Enhancers Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:216132000-216144000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
