Variant report
| Variant | rs4543111 |
|---|---|
| Chromosome Location | chr4:18665503-18665504 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs16897260 | 0.81[EUR][1000 genomes] |
| rs16897267 | 0.81[EUR][1000 genomes] |
| rs17483640 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17483809 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17548590 | 0.81[EUR][1000 genomes] |
| rs17549164 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2320734 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4057148 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4274839 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs55733109 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs56358079 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56743640 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs57400503 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs59434531 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs60238011 | 0.81[EUR][1000 genomes] |
| rs66464677 | 0.81[EUR][1000 genomes] |
| rs66526344 | 0.81[EUR][1000 genomes] |
| rs66818344 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6812709 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72619128 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs72619129 | 0.81[EUR][1000 genomes] |
| rs72619130 | 0.81[EUR][1000 genomes] |
| rs72619135 | 0.81[EUR][1000 genomes] |
| rs72619136 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72619137 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs73098395 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003931 | chr4:18241575-18849898 | Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv533087 | chr4:18362040-19176896 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv532708 | chr4:18596861-19176896 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:18664800-18665800 | Weak transcription | Brain Substantia Nigra | brain |
| 2 | chr4:18665400-18666400 | Enhancers | Brain Hippocampus Middle | brain |
