Variant report

Variant	rs56358079
Chromosome Location	chr4:18666325-18666326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17483640	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17483809	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17549164	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2320734	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4057148	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4274839	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4543111	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55733109	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56743640	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57400503	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59434531	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66818344	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6812709	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72619128	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72619136	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72619137	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv532708	chr4:18596861-19176896	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18665400-18666400	Enhancers	Brain Hippocampus Middle	brain
2	chr4:18665800-18666400	Enhancers	Brain Substantia Nigra	brain
3	chr4:18666200-18666400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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