Variant report

Variant	rs4543964
Chromosome Location	chr11:36317668-36317669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36315435..36317774-chr11:36321037..36322762,2	K562	blood:

Variant related genes	Relation type
ENSG00000135362	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10768205	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11033540	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11606116	1.00[CEU][hapmap];0.81[GIH][hapmap];0.92[TSI][hapmap]
rs16928829	1.00[ASW][hapmap]
rs16928831	1.00[ASW][hapmap]
rs16928870	1.00[ASW][hapmap]
rs4534558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs573465	1.00[ASW][hapmap]
rs72948104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948105	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36311400-36322600	Weak transcription	Spleen	Spleen
2	chr11:36311400-36331400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:36311600-36318400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr11:36311600-36318600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:36311600-36325800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:36311800-36321800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:36312200-36317800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:36314200-36321200	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:36314400-36318000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:36314400-36318400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr11:36314400-36318600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:36314400-36318600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:36316400-36320400	Enhancers	Adipose Nuclei	Adipose
14	chr11:36316800-36319000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:36317000-36318400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:36317000-36318400	Enhancers	Hela-S3	cervix
17	chr11:36317200-36318000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:36317400-36317800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:36317400-36317800	Weak transcription	Brain Anterior Caudate	brain
20	chr11:36317400-36318000	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr11:36317400-36318200	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr11:36317400-36318400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:36317600-36317800	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr11:36317600-36317800	Weak transcription	Brain Substantia Nigra	brain
25	chr11:36317600-36319400	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr11:36317600-36319600	Active TSS	Brain Angular Gyrus	brain
27	chr11:36317600-36319600	Active TSS	Brain Cingulate Gyrus	brain
28	chr11:36317600-36320600	Enhancers	Fetal Intestine Small	intestine
29	chr11:36317600-36320800	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links