Variant report

Variant	rs11606116
Chromosome Location	chr11:36292819-36292820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C11orf55-2	chr11:36290834-36293377	ENSG00000196559.3

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11033540	1.00[CEU][hapmap];0.81[GIH][hapmap];0.92[TSI][hapmap]
rs11605376	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4534558	1.00[CEU][hapmap]
rs4543964	1.00[CEU][hapmap];0.81[GIH][hapmap];0.92[TSI][hapmap]
rs72946138	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72946157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7935384	0.97[EUR][1000 genomes]
rs7942451	1.00[CEU][hapmap]
rs7948055	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7950306	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7950428	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36276800-36294400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:36278200-36293200	Weak transcription	Fetal Lung	lung
3	chr11:36279200-36294800	Weak transcription	HMEC	breast
4	chr11:36280400-36294800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:36280400-36299000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:36280800-36300200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:36281400-36293200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:36282200-36302000	Weak transcription	NHEK	skin
9	chr11:36283000-36298000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:36283200-36300000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:36286400-36293000	Weak transcription	Right Ventricle	heart
12	chr11:36287000-36294200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:36287600-36295400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:36287600-36304800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:36287800-36293400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:36288000-36293200	Weak transcription	Osteobl	bone
17	chr11:36288000-36310200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:36288400-36295200	Weak transcription	NHLF	lung
19	chr11:36288400-36304600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:36288600-36293000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:36289200-36293000	Weak transcription	HSMMtube	muscle
22	chr11:36289200-36299800	Weak transcription	HepG2	liver
23	chr11:36289200-36300000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:36289400-36293600	Weak transcription	Fetal Kidney	kidney
25	chr11:36289400-36294600	Weak transcription	Fetal Brain Male	brain
26	chr11:36289800-36293000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:36290200-36293000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:36290400-36294200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:36290600-36296800	Strong transcription	Fetal Brain Female	brain
30	chr11:36290800-36293200	Weak transcription	Aorta	Aorta
31	chr11:36290800-36310400	Weak transcription	Stomach Mucosa	stomach
32	chr11:36291000-36293000	Weak transcription	Dnd41	blood
33	chr11:36291000-36293400	Weak transcription	HUVEC	blood vessel
34	chr11:36291000-36294200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:36291000-36294400	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:36291000-36294600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:36291000-36294600	Strong transcription	Fetal Intestine Small	intestine
38	chr11:36291000-36294800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:36291000-36298200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:36291000-36298400	Strong transcription	Fetal Stomach	stomach
41	chr11:36291000-36301200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:36291000-36301800	Weak transcription	Right Atrium	heart
43	chr11:36291200-36293200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:36291200-36293600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:36291200-36294400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:36291200-36294600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:36291200-36296800	Strong transcription	Brain Cingulate Gyrus	brain
48	chr11:36291200-36298000	Strong transcription	Spleen	Spleen
49	chr11:36291200-36299000	Strong transcription	Adipose Nuclei	Adipose
50	chr11:36291200-36299000	Strong transcription	Ovary	ovary

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