Variant report

Variant	rs7950306
Chromosome Location	chr11:36281924-36281925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36281244..36283748-chr11:36307476..36309302,2	MCF-7	breast:
2	chr11:36279871..36282445-chr11:36287760..36289832,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11605376	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11606116	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946138	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72946157	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7935384	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948055	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7950428	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36276800-36294400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:36278200-36292600	Weak transcription	Esophagus	oesophagus
3	chr11:36278200-36293200	Weak transcription	Fetal Lung	lung
4	chr11:36279000-36283200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:36279200-36292000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:36279200-36294800	Weak transcription	HMEC	breast
7	chr11:36280000-36287400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:36280400-36287400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:36280400-36287600	Weak transcription	Brain Anterior Caudate	brain
10	chr11:36280400-36287600	Weak transcription	Fetal Brain Female	brain
11	chr11:36280400-36291200	Weak transcription	Brain Angular Gyrus	brain
12	chr11:36280400-36294800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:36280400-36299000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:36280800-36291200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:36280800-36291400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:36280800-36292000	Weak transcription	Brain Substantia Nigra	brain
17	chr11:36280800-36300200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:36281000-36282800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:36281000-36282800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:36281000-36287400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:36281000-36292600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:36281400-36282000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:36281400-36282800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:36281400-36292200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:36281400-36293200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:36281600-36282000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:36281800-36282200	Enhancers	NHEK	skin

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