Variant report

Variant	rs11605376
Chromosome Location	chr11:36291139-36291140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C11orf55-2	chr11:36290834-36293377	ENSG00000196559.3

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11606116	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72946138	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72946157	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7935384	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7948055	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7950306	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7950428	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36276800-36294400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:36278200-36292600	Weak transcription	Esophagus	oesophagus
3	chr11:36278200-36293200	Weak transcription	Fetal Lung	lung
4	chr11:36279200-36292000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:36279200-36294800	Weak transcription	HMEC	breast
6	chr11:36280400-36291200	Weak transcription	Brain Angular Gyrus	brain
7	chr11:36280400-36294800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:36280400-36299000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:36280800-36291200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:36280800-36291400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:36280800-36292000	Weak transcription	Brain Substantia Nigra	brain
12	chr11:36280800-36300200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:36281000-36292600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:36281400-36292200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:36281400-36293200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:36282000-36292000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:36282200-36302000	Weak transcription	NHEK	skin
18	chr11:36282800-36292200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:36283000-36291200	Weak transcription	Spleen	Spleen
20	chr11:36283000-36298000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:36283200-36300000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:36286400-36293000	Weak transcription	Right Ventricle	heart
23	chr11:36287000-36294200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:36287400-36291400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:36287600-36291800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:36287600-36295400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:36287600-36304800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr11:36287800-36291200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:36287800-36291200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:36287800-36291200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:36287800-36292000	Weak transcription	Brain Anterior Caudate	brain
32	chr11:36287800-36292000	Weak transcription	Brain Germinal Matrix	brain
33	chr11:36287800-36292200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:36287800-36292400	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:36287800-36292800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr11:36287800-36293400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr11:36288000-36291200	Weak transcription	Brain Hippocampus Middle	brain
38	chr11:36288000-36291200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:36288000-36293200	Weak transcription	Osteobl	bone
40	chr11:36288000-36310200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:36288200-36291200	Weak transcription	Ovary	ovary
42	chr11:36288200-36292000	Weak transcription	Thymus	Thymus
43	chr11:36288400-36291200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:36288400-36295200	Weak transcription	NHLF	lung
45	chr11:36288400-36304600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:36288600-36291200	Weak transcription	Primary T cells from cord blood	blood
47	chr11:36288600-36293000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:36288800-36291200	Weak transcription	Adipose Nuclei	Adipose
49	chr11:36288800-36291400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:36288800-36292000	Weak transcription	Rectal Mucosa Donor 29	rectum

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