The 2.0 version of rSNPBase

Variant report

Variant rs45443493
Chromosome Location chr1:171283477-171283478
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:171266600-171288400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr1:171280800-171283600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr1:171282400-171284200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
4 chr1:171282600-171283600 Active TSS NHDF-Ad bronchial
5 chr1:171282600-171283800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
6 chr1:171282600-171284000 Enhancers Fetal Adrenal Gland Adrenal Gland
7 chr1:171282600-171284200 Active TSS Duodenum Smooth Muscle Duodenum
8 chr1:171282800-171283600 Active TSS HUES6 Cell Line embryonic stem cell
9 chr1:171282800-171283600 Active TSS Breast Myoepithelial Primary Cells Breast
10 chr1:171282800-171283600 Active TSS Muscle Satellite Cultured Cells --
11 chr1:171282800-171283600 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr1:171282800-171283600 Active TSS Brain Angular Gyrus brain
13 chr1:171282800-171283600 Active TSS Brain Anterior Caudate brain
14 chr1:171282800-171283600 Active TSS Fetal Kidney kidney
15 chr1:171282800-171283600 Active TSS HMEC breast
16 chr1:171282800-171283600 Active TSS NH-A brain
17 chr1:171282800-171283600 Active TSS NHEK skin
18 chr1:171282800-171283800 Active TSS Brain Substantia Nigra brain
19 chr1:171282800-171283800 Active TSS Colon Smooth Muscle Colon
20 chr1:171282800-171283800 Active TSS A549 lung
21 chr1:171282800-171284000 Enhancers Primary T helper 17 cells PMA-I stimulated --
22 chr1:171282800-171284000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr1:171282800-171284000 Active TSS Brain Hippocampus Middle brain
24 chr1:171282800-171284000 Active TSS Rectal Smooth Muscle rectum
25 chr1:171282800-171284000 Active TSS Right Atrium heart
26 chr1:171282800-171284000 Active TSS Skeletal Muscle Female skeletal muscle
27 chr1:171282800-171284000 Active TSS Stomach Smooth Muscle stomach
28 chr1:171282800-171284200 Active TSS Fetal Intestine Large intestine
29 chr1:171282800-171284200 Enhancers HepG2 liver
30 chr1:171282800-171284800 Active TSS Rectal Mucosa Donor 29 rectum
31 chr1:171283000-171283600 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
32 chr1:171283000-171283600 Active TSS Primary T helper naive cells fromperipheralblood blood
33 chr1:171283000-171283600 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr1:171283000-171283600 Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr1:171283000-171283600 Active TSS Brain Cingulate Gyrus brain
36 chr1:171283000-171283600 Active TSS Brain Inferior Temporal Lobe brain
37 chr1:171283000-171283600 Active TSS Osteobl bone
38 chr1:171283000-171283800 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr1:171283000-171284200 Active TSS Duodenum Mucosa Duodenum
40 chr1:171283200-171283600 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr1:171283200-171283600 Active TSS HUES48 Cell Line embryonic stem cell
42 chr1:171283200-171283600 Active TSS iPS-15b Cell Line embryonic stem cell
43 chr1:171283200-171283600 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr1:171283200-171283600 Active TSS Primary hematopoietic stem cells blood
45 chr1:171283200-171283600 Flanking Active TSS Primary T helper cells fromperipheralblood blood
46 chr1:171283200-171283600 Active TSS Primary Natural Killer cells fromperipheralblood blood
47 chr1:171283200-171283600 Active TSS Cortex derived primary cultured neurospheres brain
48 chr1:171283200-171283600 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr1:171283200-171283600 Active TSS Adipose Nuclei Adipose
50 chr1:171283200-171283600 Active TSS Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015