Variant report

Variant	rs4547032
Chromosome Location	chr10:99179050-99179051
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99167329..99170303-chr10:99178953..99180930,2	K562	blood:
2	chr10:99174155..99176594-chr10:99178151..99179962,2	MCF-7	breast:
3	chr10:99178412..99183286-chr10:99183902..99188289,4	K562	blood:
4	chr10:99158317..99161416-chr10:99176559..99179777,3	K562	blood:
5	chr10:99159177..99160886-chr10:99176559..99179159,2	K562	blood:
6	chr10:99171315..99175453-chr10:99176654..99180468,6	K562	blood:
7	chr10:99176991..99182775-chr10:99183273..99189892,9	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL355490.1-1	chr10:99178541-99179252	XLOC_008916
2	lnc-AL355490.1-1	chr10:99176179-99185666	NONHSAT015863

No data

Variant related genes	Relation type
ENSG00000224474	Chromatin interaction
ENSG00000231970	Chromatin interaction
ENSG00000171314	Chromatin interaction
ENSG00000052749	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10748703	1.00[ASW][hapmap]
rs2153546	1.00[ASW][hapmap];0.87[YRI][hapmap]
rs2250134	1.00[MEX][hapmap]
rs4919121	1.00[MEX][hapmap]
rs701818	1.00[MEX][hapmap]
rs7077652	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467440	chr10:99134784-99204791	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv552025	chr10:99134784-99204791	Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99161600-99185200	Weak transcription	Pancreas	Pancrea
2	chr10:99167400-99185200	Weak transcription	Fetal Lung	lung
3	chr10:99167400-99185400	Weak transcription	Gastric	stomach
4	chr10:99167600-99185200	Weak transcription	Fetal Intestine Small	intestine
5	chr10:99167600-99185200	Weak transcription	Left Ventricle	heart
6	chr10:99171400-99179400	Weak transcription	Spleen	Spleen
7	chr10:99171400-99185200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:99173200-99182800	Weak transcription	HUVEC	blood vessel
9	chr10:99173800-99182400	Weak transcription	Esophagus	oesophagus
10	chr10:99174000-99185000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:99174200-99183000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:99174200-99184800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:99174200-99185000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:99175000-99182800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:99175200-99182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:99175200-99182800	Weak transcription	NH-A	brain
17	chr10:99175200-99182800	Weak transcription	Osteobl	bone
18	chr10:99175400-99185000	Weak transcription	Brain Germinal Matrix	brain
19	chr10:99176600-99183000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:99176600-99185200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:99177800-99179200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:99177800-99179200	Enhancers	Fetal Kidney	kidney
23	chr10:99177800-99179800	Enhancers	Fetal Thymus	thymus
24	chr10:99177800-99185200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr10:99178000-99179200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:99178000-99179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr10:99178000-99179200	Enhancers	Fetal Muscle Leg	muscle
28	chr10:99178000-99179200	Enhancers	Placenta	Placenta
29	chr10:99178000-99179200	Active TSS	Rectal Mucosa Donor 29	rectum
30	chr10:99178000-99179200	Active TSS	Rectal Smooth Muscle	rectum
31	chr10:99178000-99179200	Enhancers	Stomach Mucosa	stomach
32	chr10:99178000-99179200	Enhancers	HMEC	breast
33	chr10:99178000-99179400	Enhancers	Primary hematopoietic stem cells	blood
34	chr10:99178000-99179400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr10:99178000-99179400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr10:99178000-99179800	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr10:99178200-99179200	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr10:99178200-99179200	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr10:99178200-99179200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
40	chr10:99178200-99179200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
41	chr10:99178200-99179200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr10:99178200-99179400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:99178200-99185200	Weak transcription	Ovary	ovary
44	chr10:99178400-99179200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:99178400-99179200	Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr10:99178400-99179200	Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr10:99178400-99179200	Active TSS	Colonic Mucosa	Colon
48	chr10:99178400-99180400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:99178400-99180800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:99178400-99185000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links