Variant report

Variant	rs45470794
Chromosome Location	chr10:21292771-21292772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10828173	0.80[EUR][1000 genomes]
rs10828174	0.80[EUR][1000 genomes]
rs11012483	0.83[EUR][1000 genomes]
rs11012485	0.81[EUR][1000 genomes]
rs11816130	0.80[EUR][1000 genomes]
rs11817951	0.80[EUR][1000 genomes]
rs12248713	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16921415	0.80[EUR][1000 genomes]
rs55647529	0.83[EUR][1000 genomes]
rs55687305	0.83[EUR][1000 genomes]
rs7079324	0.80[EUR][1000 genomes]
rs7896773	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21284400-21294000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:21290200-21309200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:21290400-21300400	Weak transcription	Left Ventricle	heart
4	chr10:21290400-21319800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:21290600-21311200	Weak transcription	Brain Substantia Nigra	brain
6	chr10:21290800-21305000	Weak transcription	Brain Anterior Caudate	brain
7	chr10:21291000-21299600	Weak transcription	Fetal Heart	heart
8	chr10:21291000-21303800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:21291000-21305000	Weak transcription	Brain Angular Gyrus	brain
10	chr10:21292400-21309200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:21292600-21308000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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