Variant report

Variant	rs55687305
Chromosome Location	chr10:21300673-21300674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10764300	0.95[ASN][1000 genomes]
rs10764301	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10828173	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828174	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828175	0.95[ASN][1000 genomes]
rs10828176	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11012479	0.98[ASN][1000 genomes]
rs11012483	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11012485	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012486	0.98[ASN][1000 genomes]
rs11012489	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11012491	0.93[ASN][1000 genomes]
rs11012492	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11816130	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817951	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220884	0.97[ASN][1000 genomes]
rs12248713	0.81[EUR][1000 genomes]
rs16921415	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858200	0.98[ASN][1000 genomes]
rs45470794	0.83[EUR][1000 genomes]
rs45503098	0.90[EUR][1000 genomes]
rs55647529	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56070435	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58448284	0.99[ASN][1000 genomes]
rs6482158	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7073838	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7079324	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7079790	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72790553	0.94[EUR][1000 genomes]
rs72790563	0.95[EUR][1000 genomes]
rs7896773	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7904906	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7920067	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21290200-21309200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:21290400-21319800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:21290600-21311200	Weak transcription	Brain Substantia Nigra	brain
4	chr10:21290800-21305000	Weak transcription	Brain Anterior Caudate	brain
5	chr10:21291000-21303800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:21291000-21305000	Weak transcription	Brain Angular Gyrus	brain
7	chr10:21292400-21309200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:21292600-21308000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:21299000-21311000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:21300400-21300800	Enhancers	Left Ventricle	heart
11	chr10:21300400-21300800	Enhancers	Right Atrium	heart

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