Variant report

Variant	rs11012491
Chromosome Location	chr10:21308411-21308412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21308174..21311563-chr10:21311855..21315770,3	K562	blood:
2	chr10:21307229..21308983-chr10:21315087..21317954,2	K562	blood:

Variant related genes	Relation type
ENSG00000228753	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10764300	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10828173	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10828174	0.93[ASN][1000 genomes]
rs10828175	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11012479	1.00[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11012483	0.96[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs11012485	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs11012486	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11012488	0.90[AFR][1000 genomes]
rs11012489	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11012492	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11816130	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs11817951	1.00[CHB][hapmap];0.96[JPT][hapmap];0.93[ASN][1000 genomes]
rs12220884	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16921415	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs3858200	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55647529	0.93[ASN][1000 genomes]
rs55687305	0.93[ASN][1000 genomes]
rs56070435	0.93[ASN][1000 genomes]
rs58448284	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6482158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs661924	0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7073838	0.95[ASN][1000 genomes]
rs7079324	0.98[ASN][1000 genomes]
rs7079790	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7896773	0.92[ASN][1000 genomes]
rs7904906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7920067	1.00[CHB][hapmap];0.96[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21290200-21309200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:21290400-21319800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:21290600-21311200	Weak transcription	Brain Substantia Nigra	brain
4	chr10:21292400-21309200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:21299000-21311000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:21300800-21310600	Weak transcription	Right Atrium	heart
7	chr10:21302800-21311200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr10:21305200-21315600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:21305200-21319800	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:21305400-21311400	Weak transcription	Fetal Lung	lung
11	chr10:21305800-21310400	Weak transcription	Brain Anterior Caudate	brain
12	chr10:21306400-21311200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:21306400-21311800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:21308000-21309000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:21308400-21310600	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links